Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1582 ATGGCGTCCGAAAGCTCCACCGACAAGAACGTTATCTTTAGAAAACTGAAGGCGAAATCCGAAAATAAGATGTGTTTCGATTGTAATGCAAAGAATCCAACTTGGGCGTCCGTCACTTATGGGATTTTTCTCTGCATCGATTGCTCGTCTGTTCACCGTAGTCTTGGCGTCCACATAAGTTTTGTGAGATCTACAAATTTGGATTCATGGACTCCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTTTTTAAGCAACATGGTTGGACAGATGGTGGTAAAATAGAGGCCAAGTATACATCAAGAGCTGCAGAGTTGTATAGACAGATTCTTACAAAGGAAGTTGCTAAAAGTATGGCTGAGGAGGCTGATTTGCCAACATCACCTCTTGCTTCTCAGTCTGCACAAATTTCTAATGGACCTCCTGAAGTTAAAACCAAGGAAGAACCAAAAGAGAACACTGGCGGGAAGCCAGAAATTCCTGAAAGCTCTGCGTCACCAAGAGCTTCACATGCAATTGTTTCTTCTGTTGTAAAGAAGCCTGTTGGTACTAAAAAGGCTGGGAAGAGTGGGGGTCTTGGTGCCCGGAAGCTTACTAAAAAGCCAAGTGAGTCTCTCTATGACCAGAAGCCGGAAGAACCACCTGCTCCAGTTTCTTCTTCTGCAAATAGCAATTTGCTTGCTGGGCCACCCCCGGCGTCTCGGTTTGAGTATGCTGATGATGTCCAGTCTTCTGAGTCAAACTCTGGAGGGTCACATCAAATTAGTCACGTGGCTCCACCAAAGTCATCAAGCTTCTTTGCAGATTTTGGAATGGATAGTGGTTTTCCAAAGAAATATGGTTCAAATTCCTCAAAAGTGCAAGTTGAAGAATCTGATGAAGCGAGAAGGAAGTTCTCAACTGCTAAATCTATTTCTTCATCCCAATTTTTTGGGGATCAGAACAGAGCAGCAGATGTGGATGCTCAAGTTACTTTGTCGAAGTTTTCAGGTTCATCTTCCATCTCCAGTGCTGATCTTTTTGGCCATTCCGAATCCTCCATTGATGTCACTGCTAATGACCTCATAAATCGACTGTCCTTCCAGGCTCAGCAGGATATTTCTAACATTAAAAATATTGCTGGAGAGACTGGAAAGAAGCTCAGCTCACTGGCTTCCAATTTGTTAACGGACCTTCAAGACAGAATTCTTTAA 1212 0.4323 MASESSTDKNVIFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSSVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILTKEVAKSMAEEADLPTSPLASQSAQISNGPPEVKTKEEPKENTGGKPEIPESSASPRASHAIVSSVVKKPVGTKKAGKSGGLGARKLTKKPSESLYDQKPEEPPAPVSSSANSNLLAGPPPASRFEYADDVQSSESNSGGSHQISHVAPPKSSSFFADFGMDSGFPKKYGSNSSKVQVEESDEARRKFSTAKSISSSQFFGDQNRAADVDAQVTLSKFSGSSSISSADLFGHSESSIDVTANDLINRLSFQAQQDISNIKNIAGETGKKLSSLASNLLTDLQDRIL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1582 403 MobiDBLite consensus disorder prediction 246 267 - -
Alju12g1582 403 MobiDBLite consensus disorder prediction 133 147 - -
Alju12g1582 403 MobiDBLite consensus disorder prediction 128 269 - -
Alju12g1582 403 CDD ArfGap_ArfGap2_3_like 8 123 - -
Alju12g1582 403 Pfam Putative GTPase activating protein for Arf 13 108 IPR001164 GO:0005096
Alju12g1582 403 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Alju12g1582 403 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Alju12g1582 403 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Alju12g1582 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 4 403 - -
Alju12g1582 403 Gene3D Arf GTPase activating protein 1 139 IPR038508 -
Alju12g1582 403 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Alju12g1582 403 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Alju12g1582 403 MobiDBLite consensus disorder prediction 282 310 - -
Alju12g1582 403 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Alju12g1582 403 SMART arf_gap_3 10 126 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1582 Alju-ChrAlju12 37107562 37110869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1582 5 91 C2H2 Transcription Factor Family AT3G07940 46.591 4.86e-20 87.4