Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1578 ATGAATCTTTGGACCGACGATAACTCCTCCGTCATGGACGCCTTCATAGGTTCCGATCTGTCTTCTCTCTGGCCTCCTCAGCAATCCTCTGCTTCTACGACGACCACCACTGGCACTGAACCCGCCAAATCTTTCTCTCAAAACCAGCTTTCCGTTTGCATCTTCAATCAGGAGACTCTCCAACAACGTCTCCAGGCGCTGATTGAAAAGGCCAGCGAGAGCTGGACCTACGCTATCTTCTGGCAATCTTCTTGTGATTACTCGGGAGCCTCCGTGTTGGGTTGGGGAGATGGATACTACAAAGGCGATGAGTTTAAAGGAAAGGGGAAGGCCAAAATGACGCCGTCTTCCGCGGAGGAGCAGGAGCACCGGAAGAAGGTTCTTCGCGAGCTTAATTCGCTAATATCCGGCTCATCCTCCGTCCTGGATGACGCCGTAGACGAAGAAGTAACGGATACCGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTTACAACGGCGGCGGATTGCCGGGCCAGGCGTTCCTCAATTCGAGCCCGGTTTGGGTCGCCGGTTCCGACCGGTTGGCAGCTTCAACATGCGAGAGGGCGAGGCAGGGTCAGCTGTTCGGGCTTCAGACTTTGGTTTGTATACCGTCGGCGAGTGGTGTGGTCGAACTAGGCTCCTCGGAGCTGATATTTCAAAACTCTGATCTGATGAATAAGGTCAGGGATTTGTTCAATTTCAATAACGCCGAAGCGAGTTCTATATGGCCGTCTAATGCTTCAACTGCTGCTGATCAGGGTGAGAACGACCCTTCTTCACTCTGGCTCAACGATCCTTCTGCAATTGAAATCAGGGATTCTGTGACTACTGTTGCGCCCAATTCAGTGCCCAGTTCTACCACCAGTCAAAACAATAATCCGAGGCCGATGCAGTTAGATACAAGAGGTTCCACGTCTTTGGCTGAGACCCCAACTTCCGTTCATGTCCCAAACGCTCACCATAGCCACCAACAACAACGGCAACAGCAGCGTCATTCGATGAACCAGGGTTTCTTTTCACGGGAATTGAACTTTTCGGACTATGGATTGGACGGAAACGGCGTGAAAAATGGTAATTCGCATTCCTTGAAGCCGGAATCGAGTGAGATTTTGAATTTCGGGGAGAGCAGGAGAAACGCTTATAATGGAAATGGGAATATCCTTTCAGGTCAATCTCAATTCAATGGCGAGGAGAAGAAGAGGAGGTCGCCTACGTCTAGGGGTAGCAATGACGAAGGCATGCTTTCTTTCACTTCAGGCGTGGTTTTACCCCCTTCAAATACGAAGACCGGCGGCGGCGGCGGCGATTCTGATCATTCCGATCTCGAAGCTTCTGTGATTAAGGAGGTAGATAGTAAAGTGGCCGAACCAGAGAAAAAACCTCGCAAGAGAGGACGAAAACCCGCAAATGGCAGAGAGGAGCCTCTGAATCATGTTGAAGCTGAGAGGCAAAGGAGAGAGAAGCTCAATCAACGGTTCTATGCGCTTCGTGCTGTGGTTCCAAACGTTTCAAAGATGGATAAAGCATCCCTTCTGGGCGATGCCATATCTTACATCTCTGAGCTCAAGTCGAAGCTTCAGACAACGGAATCAGACAAGAACGAATTGCAGAGCCAATTGGAGTCTGTCAAGAAAGAACTCGAGCTAGCCCACAAAGATTCAGCGCTACCTCCACTGGAGAAAGAACCAAAGCCGTCCAATCATCAAGCAAGCAAGATTACTGATTTGGACATCGACGTGAAGATTATAGGTTGGGACGCGATGATTAGGATTCAATGCAGCAGGAAGAACCACCCAGCAGCAAGGTTGATGGCAGCATTGAAGGAGCTAGACCTGGATGTGAACCACGCGAGTGTGTCGGTGATGAATGATTTGATGATCCAACAAGCAACAGTGAGGATGGGAAGTCAATTCTACACGCAGGAGCAACTCCGTTTAGCACTTTCGTCCAAAGTTGGCGATGTCCGATAG 1998 0.499 MNLWTDDNSSVMDAFIGSDLSSLWPPQQSSASTTTTTGTEPAKSFSQNQLSVCIFNQETLQQRLQALIEKASESWTYAIFWQSSCDYSGASVLGWGDGYYKGDEFKGKGKAKMTPSSAEEQEHRKKVLRELNSLISGSSSVLDDAVDEEVTDTEWFFLVSMTQSFYNGGGLPGQAFLNSSPVWVAGSDRLAASTCERARQGQLFGLQTLVCIPSASGVVELGSSELIFQNSDLMNKVRDLFNFNNAEASSIWPSNASTAADQGENDPSSLWLNDPSAIEIRDSVTTVAPNSVPSSTTSQNNNPRPMQLDTRGSTSLAETPTSVHVPNAHHSHQQQRQQQRHSMNQGFFSRELNFSDYGLDGNGVKNGNSHSLKPESSEILNFGESRRNAYNGNGNILSGQSQFNGEEKKRRSPTSRGSNDEGMLSFTSGVVLPPSNTKTGGGGGDSDHSDLEASVIKEVDSKVAEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYISELKSKLQTTESDKNELQSQLESVKKELELAHKDSALPPLEKEPKPSNHQASKITDLDIDVKIIGWDAMIRIQCSRKNHPAARLMAALKELDLDVNHASVSVMNDLMIQQATVRMGSQFYTQEQLRLALSSKVGDVR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1578 665 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 482 531 IPR011598 GO:0046983
Alju12g1578 665 FunFam Transcription factor bHLH13 475 549 - -
Alju12g1578 665 MobiDBLite consensus disorder prediction 390 492 - -
Alju12g1578 665 SMART finulus 488 537 IPR011598 GO:0046983
Alju12g1578 665 MobiDBLite consensus disorder prediction 285 343 - -
Alju12g1578 665 MobiDBLite consensus disorder prediction 450 492 - -
Alju12g1578 665 CDD bHLH_AtAIB_like 479 555 - -
Alju12g1578 665 Coils Coil 528 562 - -
Alju12g1578 665 PANTHER MYC 46 660 IPR045084 GO:0003700|GO:0006355
Alju12g1578 665 MobiDBLite consensus disorder prediction 417 443 - -
Alju12g1578 665 Gene3D - 474 563 IPR036638 GO:0046983
Alju12g1578 665 Pfam Helix-loop-helix DNA-binding domain 486 531 IPR011598 GO:0046983
Alju12g1578 665 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 485 551 IPR036638 GO:0046983
Alju12g1578 665 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 241 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1578 Alju-ChrAlju12 37059744 37061741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1578 1 662 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.790 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju12g1578 bHLH-MYC_N 2e-54 CL0161