Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1565 ATGCCCTACAAAACAAGATTAGCACTCTTTTTAATTGGGGTAAGATTCTGTGACTGTGTTGCTCTGCGGAACACCAGAGAATACTGTTACCTCTCACTCAAAGGCCAAGGCTTTGAAGGCCGTGACCATTGTCATTACAGCCTGCCCTGTTTTTTGGGTCAGCGGCTAGAGGAAGAAGCACAGAGAAAAACCAGAGAGAAATTAATGGAGCTCACACAAGTTGGTTTTTTGGAAGAGTTACTTGCTCCAAGAAGAGGAGACTCATGGAATAGTACTATCTCCTCTGGTTTTAATGAGCTCTTTCCTTCTACCTCTTGGTGTTTTGACTCTTTTGAAGACAACAACCCTTCAAATTTTTCTGCCTTCAATAATCCTCCATTTTCTTCACTACCAGCTCCACTTTTAGACCACAGACTTGAATATAGTTCGTACCCATTTCTTGATGGCTTCACTGTGAACACTGTTGACTCTGCACCACCACTTCAAGCTCATGAAGATGAAGACCTTGCCTTTCTGGGTTTTGAGAATCAGAGTTCTGAAGAAGGAAACACCACCACCACCAACAACAACAACAACAACAATAATGCCACTAATTGCTGCAAAATCGAAGAACAAGCCTTCGAACAAGTTCCAGTGTTCAACATGGGGGCGTGTTGTGGGGAGAAGAAACCCAAATCGAAGAAGCTAGAAGGTCAGCCCTCCAAGAATCTCATGGCAGAAAGAAGAAGAAGAAAACGCCTCAATGATCGATTGTCCATGCTAAGATCAACCGTCCCCAAGATCAGCAAGATGGACAGGACATCTATTCTTGGAGACACCATAGATTACATGAAGGAGCTTCTGCAAAAGATAAGCAAGTTGCAGGAAGAAATGGAGGAGGGTGAAAATAATGAGTTGAACTTCATAGGCATTTCCAAGGAGGAGAAGCCAAATGAAGTAATGGTGAGAAATTCCCCTAAGTTTGAGGTTGAGAGGAGAGAGCAGGACACAAGGATCAATATCTGCTGTGCCACAAAGCCTGGATTACTACTCTCAACAGTGAATACCTTGGAAGCATTAGGTCTTGAGATTCAACAATGTGTGATAAGTGGCTTCAATGATTTCACAATGCAAGCTTCTTGCTCAGAGGTGGCTGAGCAGAGAGCTTGTACGGGCTCTGAGGAGATTAAGGAAGCGCTGTTCAGAAATGCAGGCTATGGTGGGAGATATCTGTAG 1215 0.437 MPYKTRLALFLIGVRFCDCVALRNTREYCYLSLKGQGFEGRDHCHYSLPCFLGQRLEEEAQRKTREKLMELTQVGFLEELLAPRRGDSWNSTISSGFNELFPSTSWCFDSFEDNNPSNFSAFNNPPFSSLPAPLLDHRLEYSSYPFLDGFTVNTVDSAPPLQAHEDEDLAFLGFENQSSEEGNTTTTNNNNNNNNATNCCKIEEQAFEQVPVFNMGACCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSTVPKISKMDRTSILGDTIDYMKELLQKISKLQEEMEEGENNELNFIGISKEEKPNEVMVRNSPKFEVERREQDTRINICCATKPGLLLSTVNTLEALGLEIQQCVISGFNDFTMQASCSEVAEQRACTGSEEIKEALFRNAGYGGRYL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1565 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 280 IPR011598 GO:0046983
Alju12g1565 404 Pfam Helix-loop-helix DNA-binding domain 237 280 IPR011598 GO:0046983
Alju12g1565 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 294 IPR036638 GO:0046983
Alju12g1565 404 Coils Coil 277 297 - -
Alju12g1565 404 SMART finulus 237 286 IPR011598 GO:0046983
Alju12g1565 404 Gene3D - 223 297 IPR036638 GO:0046983
Alju12g1565 404 Coils Coil 237 257 - -
Alju12g1565 404 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 124 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1565 Alju-ChrAlju12 36935079 36940672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1565 222 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 70.109 4.68e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju12g1565 HLH 2.6e-09 No_clan