Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1559 ATGGGAAGAGGGAAGATTGAGATAAAAAGGATTGAAGATAGCGCAAGCAGGCAAGTGACTTTCTCGAAAAGGAGAAAGGGATTGTTGAAGAAAGCCAGAGAGCTTTCAATTCTTTGTGATGTAGAAGTTGGACTCGTCATTTTCTCCAGTACTGGAAGGCTTCATGAATATGCCACCACCAGCATAAAATCAGTGGTTGAGAGATATAACAGCTGTAAGGAGGAACACGAACGACTGACGAATCCTGAATCAGAGGTGAAGTTCTGGCAAAGGGAAGCTGAAATATTAAGGCAGCAAGCACATAATCTTCAAGAAAACCATAGGAAATTAATGGGAGAGCAGCTTTATGGTTTGAGTGTTGCGAACCTACAAGATATAGAGAATCAACTGGAGATTAGTCTCCGAGGTGTCCGCATGAAAAAGGAACAAATTCTGACAGAAGAAATCCACGAGCTGAGAAGAAAGGGAAACGATATCCATCAGCAAAATGTAGAACTCTATAAGAAGGTAAACTTCATTCAACAGCAAAACATGCAACTATACAATGAGGAAGCAAGCAGAAATGCATCCATTTCATATGGTGTGCATGCAGATCAAGAACATCCACAAGCAATGACCCAACTTCAGTTATCGCAGCCTGAAAAAGAAGCTCATCACGAGACATCAGGTAGTGCTACAAGATAA 684 0.4123 MGRGKIEIKRIEDSASRQVTFSKRRKGLLKKARELSILCDVEVGLVIFSSTGRLHEYATTSIKSVVERYNSCKEEHERLTNPESEVKFWQREAEILRQQAHNLQENHRKLMGEQLYGLSVANLQDIENQLEISLRGVRMKKEQILTEEIHELRRKGNDIHQQNVELYKKVNFIQQQNMQLYNEEASRNASISYGVHADQEHPQAMTQLQLSQPEKEAHHETSGSATR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1559 227 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Alju12g1559 227 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Alju12g1559 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju12g1559 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju12g1559 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju12g1559 227 MobiDBLite consensus disorder prediction 213 227 - -
Alju12g1559 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju12g1559 227 Coils Coil 86 113 - -
Alju12g1559 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju12g1559 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju12g1559 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 190 - -
Alju12g1559 227 MobiDBLite consensus disorder prediction 197 227 - -
Alju12g1559 227 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju12g1559 227 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju12g1559 227 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Alju12g1559 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1559 Alju-ChrAlju12 36882131 36888240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1559 1 225 MADS-box Gene Family AT2G22630 57.018 4.66e-87 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju12g1559 K-box 2.7e-25 No_clan