Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1551 ATGAAGAAGGTGGGGGAGATCAGAAAACGGGTTTTCTTGCTGTGGTGGTTTGGAATTACTGTGAAGTTCTGTTTCTTGCTGATTGCTTGTTTCTGTCACGACGAGACCTCAGTTAGAAGAGAGTTGAGGGGAATAACAAACACTTCAAAACCCAGAGGGCCTACAATTTCTGCAGTGAAGCTTAATACAGAGGATCATGGCCAGGTGGTGATTGAGAATGGCATTGTTCAGATCACCCTGTCCAGCCCCGAGGGGTATATTCTTGGAATCTCATATGATGGAATCGACAATGCACTAGAATCTCGTAACGAAGAACCAGAGAGAGGGTATTTTGATGTGGTCTGGAATAAGCCTGGGAAAAACAGTACTTTTCAGAGAATCCATGGGACCGAATTTTCAGTAGTATCATTGGACGACAACCAAGTGGAGATTTCGTTTGTAAGAACATGGTCCCCTTCCCTGGAAGGCGAAAATGTTCCCATAAACATAGACCAAAGGTATATATTGCGAAGAGGCGATTCTGGGTTTTACTCTTACACAATATTTGAACGCCCAGAAGGATTTCCAGCAGTGGAGGTTGATCAAATCAGGAATGTTTTCAAGCTCCAGGAAGAAAGGTTCGTGTATATGGCTATATCAGACACAAGGCAGAGATACATGCCAAGCATGAAGGACAGAGAAACAGGGCAACCTCTGGCTTATCCTGAAGCTGTTCTCTTAACCAATCCATCTAATGAAGACTTTAGAGGAGAGGTGGACGACAAGTATCAGTACTCTTGTGAGAATAAAGAAAACAGAGTACATGGTTGGATTAGCGTTGATGCTGAAGCGCCCATGGGCTTTTGGGTAATTACACCCTCTAACGAGTTTCGTAATGCAGGGCCCATCAAGCAAGACCTCACCTCTCATGTGGGCCCATTTTCCCTCTCTATGTTTGTGAGCACTCACTATGCTGGGAAGGAAGTGACTATGGAATTTCAAGAAGGAGAGACTTATAAGAAGGTTTTCGGCCCTATTTTTGTGTATCTCAACTCTGCTTCAAACTCTGAGAACTCACTAACACTCTGGACAGATGCTGTACAACAGATGTCTAAGGAAGTAAAAAGGTGGCCTTATGATTTCCCTCAATCACAAGCTTACATTCCACCAAGTCAACGTGGGACAGTGTTTGGAAGATTACTGGTTCAAGATTGGTATATAAGAGGAGGCAGATTTCTAAATGCTGACTCTGCATATATTGGTCTGGCTCTTCCTGGTGCTGTAGGGTCATGGCAAAGAGAAAGCAAGGGCTATCAGTTTTGGACCCAAGCAAGCAAGAAGGGCTATTTTGTGATAAACAATGTTGTTCCTGGAGATTACAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACAGATATAATGCTACAATCACCATAACACCAGGTAGTTACAATAATTTTCTTCAGTATCCTTCTGGTTGTGTAATCAAGTTGGATTCACTTGTATATAATCCTCCAAGAAGTGGATCCACTGTTTGGGAAATTGGAGTCCCAGATCGCTCAGCTGCAGAATTCTATATCCCAGACCCTTACCCTACACTCATGAACAAATTATACAATGAACAGCCCAATGACAAGTTTAGACAATATGGGTTATGGGAACATTATGCAGATTCATATCCAAACGGTGATCTGGTCTACACTATTGGTGTTAGTTCATATGATCAAGATTGGTTCTATGCTCATGTTACAAGGCTCATCGGAAATAAGACATACGAGGCAACGACATGGCAGATTATATTTAATCTTCAAAATGACCCATTCACAGGAAATTACACCCTCCAACTAGCCTTAGCAGCAGCCGCTAATTCTGACCTAAAGATTTGGATTAATGGGCAAGGTAATGGTCCTGCTCTGTTTGAAACTGGGAAATTTGGGGGAGACAGTGCCATACCAAGGCATGGAATCCATGGATTGTACTGGTTGTTCAGCATTGGCGTCCCAAGCGATCTTTTGGTGAAAGAGAATAACACTATCTATCTGCAACAGTCATTTGCCATAAATCCCTTTCAAGGGGTTATGTATGACTATATACGTTTAGAAAGACCACCAGCTCTAAGGACTTGA 2112 0.4261 MKKVGEIRKRVFLLWWFGITVKFCFLLIACFCHDETSVRRELRGITNTSKPRGPTISAVKLNTEDHGQVVIENGIVQITLSSPEGYILGISYDGIDNALESRNEEPERGYFDVVWNKPGKNSTFQRIHGTEFSVVSLDDNQVEISFVRTWSPSLEGENVPINIDQRYILRRGDSGFYSYTIFERPEGFPAVEVDQIRNVFKLQEERFVYMAISDTRQRYMPSMKDRETGQPLAYPEAVLLTNPSNEDFRGEVDDKYQYSCENKENRVHGWISVDAEAPMGFWVITPSNEFRNAGPIKQDLTSHVGPFSLSMFVSTHYAGKEVTMEFQEGETYKKVFGPIFVYLNSASNSENSLTLWTDAVQQMSKEVKRWPYDFPQSQAYIPPSQRGTVFGRLLVQDWYIRGGRFLNADSAYIGLALPGAVGSWQRESKGYQFWTQASKKGYFVINNVVPGDYNLFAWVPGFIGDYRYNATITITPGSYNNFLQYPSGCVIKLDSLVYNPPRSGSTVWEIGVPDRSAAEFYIPDPYPTLMNKLYNEQPNDKFRQYGLWEHYADSYPNGDLVYTIGVSSYDQDWFYAHVTRLIGNKTYEATTWQIIFNLQNDPFTGNYTLQLALAAAANSDLKIWINGQGNGPALFETGKFGGDSAIPRHGIHGLYWLFSIGVPSDLLVKENNTIYLQQSFAINPFQGVMYDYIRLERPPALRT 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1551 703 Pfam Polysaccharide lyase family 4, domain II 409 479 IPR029413 -
Alju12g1551 703 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 699 - -
Alju12g1551 703 Pfam Rhamnogalacturonate lyase family 58 252 IPR010325 -
Alju12g1551 703 Gene3D - 503 696 - -
Alju12g1551 703 Pfam Polysaccharide lyase family 4, domain III 506 695 IPR029411 -
Alju12g1551 703 CDD RGL4_C 508 696 - -
Alju12g1551 703 CDD RGL4_M 385 478 IPR029413 -
Alju12g1551 703 FunFam Rhamnogalacturonate lyase B 382 481 - -
Alju12g1551 703 Gene3D - 381 482 - -
Alju12g1551 703 Gene3D - 61 364 IPR014718 GO:0030246
Alju12g1551 703 SUPERFAMILY Galactose mutarotase-like 63 351 IPR011013 GO:0003824|GO:0005975|GO:0030246
Alju12g1551 703 CDD RGL4_N 62 347 - -
Alju12g1551 703 SUPERFAMILY Starch-binding domain-like 381 479 IPR013784 GO:0030246
Alju12g1551 703 SUPERFAMILY Galactose-binding domain-like 503 696 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1551 Alju-ChrAlju12 36786902 36791667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1551 56 698 Polysaccharide Lyase AT1G09890 53.478 0.0 704