Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1550 ATGGAGGTAGGTGATATAAGGAAACGAGTTTTCTTGTTGTGGTGGTTTGGAATGAACCTCAAGCTTTTCTTTTTGCAATGTGGTTGTTCTGACAGCAAGATCTCAGAAAGCAGCAGAAAAATGTTGTTGAGAAATATAAACAGTAGTCCAAAACCCAGTTCAGAAGTTAAGGTGAATAAAGAACATGGTGAGAGAGTGGTGATGGACAATGGCATAGTCCAAGTCACTCTATCAAATCCCCAGGGGCATGTTGTGGGAATATCATATAATGGAATCGACAATGTACTAGAATCTAGTAATGATGATCGAGACAGAGGGTATTCTGATGTAGTTTGGGATAAACCAGGAAAAACTAATAATCATCATCAGAGAATCGACGGGACAAAGTTTACAGTTGTAGCAGATAACAAAAATCAAGTGGAGATTTCGTTTGTAACAACATGGACATCTTCCATGGAAGGCAAAAGTGTCCCCATTAACATAGACCAAAGGTATATATTGCTACGAGGAAGTTCTGGATTTTACTCTTACATTATATTCGAGCGTCCAGAAGGATTTCCAGCAGTGAAGGTTGAGCAAATCAGAACTGTTTACAAGCTTCAGGAAGAAATGTTCCACTATATGGCTATATCAGACACTAGGCAAAGATACATGCCAACAATGAGAGATAGAAAAAGAGGGAAAACCTTAGATTATCCTGAAGCTGTTCTCTTAACCAACCCATCCAATGAAACCTTTAAAGGAGAGGTGGACGACAAATATCAGTATATTCTTCAGAATAAAGACAACAGAGTACATGGTTGGATTAGCATTAATTCTGACGCAGCCATGGGGTTCTGGATAATAACACCTAGCAATGAGTTTCGCAATGGTGGGCCCTTTAAGCAAGATCTTACCTCCCATGTTGGTCCCTTTGCCCTGTCTATGTTTATGAGCATGCACTTGGCTGGGAAGGATTTAGTCATGGAGTTTCAAGAAGGGGAGACCTATAAAAAAGTTTTTGGCCCTGTTTTTGTGTATCTTAACTCCATTTCGAGCAATGTCAATACACAAACTCTCTGGCAAGATGCTGTGCAACAGATGTTCAAGGAAGTCCAAAGCTGGCCTTATGATTTCCCAAAATCACAAGACTACATTCCACCACCCAAACGCGGAACTGTGGCTGGAAGATTACTGGTTCAAGATATGTATATCCAAGGAGGCAGGTTTCAAAATGGTGACTCTGCTTATGTTGGTTTAGCTATGCCTGGTGAAGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAGTTCTGGACTAAAGCCAGCAAGGAAGGCTATTTCGCGATACAGAATGTTATACCAGGAGAGTATGATTTGTTTGCATGTGTTCCAGGCTTTATTGGCGATTATAAATATGGTACAACAATCACCATCGAACCAGGGTGTTGGATCAATTTGGGTAATATTGTATATAGTCCTCCAAGAAATGGTCGTACCGTTTGGGAAATTGGAGTTCCAGATCGCTCAGCAGCAGAATTCTATATCCCCAACGCAAATAAAGAACTCGTGAACAAATTATACAACAATGATCCCAATGAAAAGTTTAGACAATATGGATTGTGGGCACGTTATGCTGAATTGTATCCAAAAAATGACATGGTTTACACTGTTGGTGTTGATTCTCATGATAAGGATTGGTTCTTTGCTCATGTTACAAGGAACGTAGGAGATAACAAGTATCAAGCGACTATATGGCAGATTAAATTTGAACTTCGACATCGCGATCAATTAGAAGGAAATTACACCCTACGGCTGGCTTTAGCATCAGCCACTAATTCTAAATTGCAGATTTGGTTCAATAAGCAAGGTGAGAAGCGTCACTTATTTAAAACAGGACTGTTAAGAGGAGACAATGCCATAGCAAGACATGGAATACATGGATTGTATTGGTTGTTCAGCATTGATGTTCCAAGAGATCATCTGGTGGAAGGCAACAATACTATGTATTTGAAACAGCCACTTGCTCTTACTCCTTTCCAAGGACTTATGTATGACTATATACGTCTAGAGAGACCTCCCTCCCCAAGAATTTGA 2076 0.4013 MEVGDIRKRVFLLWWFGMNLKLFFLQCGCSDSKISESSRKMLLRNINSSPKPSSEVKVNKEHGERVVMDNGIVQVTLSNPQGHVVGISYNGIDNVLESSNDDRDRGYSDVVWDKPGKTNNHHQRIDGTKFTVVADNKNQVEISFVTTWTSSMEGKSVPINIDQRYILLRGSSGFYSYIIFERPEGFPAVKVEQIRTVYKLQEEMFHYMAISDTRQRYMPTMRDRKRGKTLDYPEAVLLTNPSNETFKGEVDDKYQYILQNKDNRVHGWISINSDAAMGFWIITPSNEFRNGGPFKQDLTSHVGPFALSMFMSMHLAGKDLVMEFQEGETYKKVFGPVFVYLNSISSNVNTQTLWQDAVQQMFKEVQSWPYDFPKSQDYIPPPKRGTVAGRLLVQDMYIQGGRFQNGDSAYVGLAMPGEAGSWQRESKGYQFWTKASKEGYFAIQNVIPGEYDLFACVPGFIGDYKYGTTITIEPGCWINLGNIVYSPPRNGRTVWEIGVPDRSAAEFYIPNANKELVNKLYNNDPNEKFRQYGLWARYAELYPKNDMVYTVGVDSHDKDWFFAHVTRNVGDNKYQATIWQIKFELRHRDQLEGNYTLRLALASATNSKLQIWFNKQGEKRHLFKTGLLRGDNAIARHGIHGLYWLFSIDVPRDHLVEGNNTMYLKQPLALTPFQGLMYDYIRLERPPSPRI 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1550 691 CDD RGL4_C 495 684 - -
Alju12g1550 691 Gene3D - 490 683 - -
Alju12g1550 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 687 - -
Alju12g1550 691 Pfam Polysaccharide lyase family 4, domain III 493 683 IPR029411 -
Alju12g1550 691 CDD RGL4_N 59 343 - -
Alju12g1550 691 Gene3D - 379 476 - -
Alju12g1550 691 SUPERFAMILY Starch-binding domain-like 380 481 IPR013784 GO:0030246
Alju12g1550 691 Pfam Rhamnogalacturonate lyase family 47 250 IPR010325 -
Alju12g1550 691 Pfam Polysaccharide lyase family 4, domain II 407 479 IPR029413 -
Alju12g1550 691 SUPERFAMILY Galactose-binding domain-like 490 684 IPR008979 -
Alju12g1550 691 Gene3D - 58 357 IPR014718 GO:0030246
Alju12g1550 691 CDD RGL4_M 383 483 IPR029413 -
Alju12g1550 691 SUPERFAMILY Galactose mutarotase-like 63 344 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1550 Alju-ChrAlju12 36779327 36784333 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1550 61 686 Polysaccharide Lyase AT1G09890 55.962 0.0 707