Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1549 ATGAGCTTGCAAATCTTCTTCTTCTTCTTCTTGCTTGCTGGTTGTTCTGAGATCATCAAATCCAGTGTTGTACGTAAGCTTGAAGGCTCTAATCAACCTGTCACGCTGCAACAATGGGATGACCAGGTGGTGATGTATAATGGGATCGTCAGCGTTACATTGTCAAGGCCAGACGGCAATTTGATAGGAGTATCCTATAATGGGATTGATAACCTTCTTGAACCTCGTAATCGTCCTGATAATAGAGGGTATTGGGACTTTTCTTGGAACGCGCTAGGTTACCGCAGTAACTATGACAAATTCAGAGGGACAAAGTTTTCTGTTATAGTGGAGAACGAAGACCAAGCCGAAGTTTCTTTCTTATACACATGGAATCCTACCTTGCCTGCAAGAAGCATGCCAATAAATATAGATATAAGGTATATTTTACGTAGAGGCAGCTCAGGATTATATTCATATGCCATATTGGAGCGTCTAGAAGGTTTTCCTGCCATTCGGGTGGATGTCTTTAGGCTCACTTATAAGCTCAACCAATACCTGTTCCATTACATGGTTATAACAGACGAAAGGCAGAGAGAAATGCCCAGCGCTGAAGAAAGATCCAAAGGCCAAACCCTTGATTATCCTGAAGCTGTCCTATTAACCAATCCTAGTAACCCTGAATTCTTAGGGGAGGTGGATGATAAATACATGTACTCCGTTGAGAACAAAGACAACAAAGTTAACGGATGGGTCTCTTTTAACACTCCCAATTCTTCATCAGTTGGGTTCTGGATGATTACACCCAGCAACGAATTTCGTAATGGTGGACCTACCAAGCAAAGTCTCACCTCTCATGTTGGCCCTGTCACCCTCAACTCTTTCCTGAGCCCACACTATGCTGGGAAGGACATATCCATGTTCTTCAGGGAGGGAGAGACCTATAAGAAGGTATTTGGCCCCACCTTTTTGTACCTCAACACTGTTCCAAATCCCCATGATTCTCAGACTCTCTGGGAGGATGCTAAAAACCAGATGCAAAAGGAAGTTGAAAGCTGGCCCTATGATTTCCCTCAATCAAAAGACTTCATTCCATCCAATCAACGTGGAAAAGTGTCTGGACAATTGCTAATCACAGGGTACCCTGCAGGTGTTACATCTGGTAATGCTTACGTTGGTCTGGCCCTCCCAGGATATGAAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTTTGGACCCAAGCTGATAGCAGCGGCTTGTTCACTATAACAGATGTTGTGCCTGGAGTCTATAACTTGTATGCTTGGGTGCCTGGCATTCTTGGTGATTACAAATATGAGTTTGACATTACCATCAAACCAGGTGATGCCATAGAATTAGGTCAGTTAAATTATAGGCCTCCAAGAAATGGTCCTACGGTTTGGGAAATTGGGATTCCTGATCGATCAGCCCAAGAGTTTTATGTGCCAGACCCATATCCTAACCTCATCAACAAGTTATTTTTAGGAAAGCCCAATCACAGGTTTAGACAATACGGTTTGTGGAAACGCTACTCCGAATTATATCCAACTAATGATCTCGTTTACCATGTTGGTGTCAGTGATTATTCCAAACATTGGTTCTATGCTCAAGTCCCCAGGGACCTGGGAAATGGCACATACACTTCAACAGTGTGGGAGATAAGATTTGAATTGCCATTCGTGATTCCGGGAAGTTACACACTGCATATTGTCTTAGCATCATCCAGCAGTTATCACTTGCATGTTTGGTTCAATAATGGCGCTGATCGTCGCATGCGGTTCGATACAAGATTAAGAGGAGGAGATCAGGACAATGCAATAGCAAGGCATGGGATACATGGATTGTGTTGGAGGTACAGTTACCAAGTGCCAAGCTATCTACTTGTGAACGGAACCAACTCTATTTACCTCTCACCATTCAGAGTTTTTTCTCCTCTTCAAGGCATTATGTATGATTATATCCGTCTTGAAAGCCCCTAG 1983 0.4322 MSLQIFFFFFLLAGCSEIIKSSVVRKLEGSNQPVTLQQWDDQVVMYNGIVSVTLSRPDGNLIGVSYNGIDNLLEPRNRPDNRGYWDFSWNALGYRSNYDKFRGTKFSVIVENEDQAEVSFLYTWNPTLPARSMPINIDIRYILRRGSSGLYSYAILERLEGFPAIRVDVFRLTYKLNQYLFHYMVITDERQREMPSAEERSKGQTLDYPEAVLLTNPSNPEFLGEVDDKYMYSVENKDNKVNGWVSFNTPNSSSVGFWMITPSNEFRNGGPTKQSLTSHVGPVTLNSFLSPHYAGKDISMFFREGETYKKVFGPTFLYLNTVPNPHDSQTLWEDAKNQMQKEVESWPYDFPQSKDFIPSNQRGKVSGQLLITGYPAGVTSGNAYVGLALPGYEGSWQTESKGYQFWTQADSSGLFTITDVVPGVYNLYAWVPGILGDYKYEFDITIKPGDAIELGQLNYRPPRNGPTVWEIGIPDRSAQEFYVPDPYPNLINKLFLGKPNHRFRQYGLWKRYSELYPTNDLVYHVGVSDYSKHWFYAQVPRDLGNGTYTSTVWEIRFELPFVIPGSYTLHIVLASSSSYHLHVWFNNGADRRMRFDTRLRGGDQDNAIARHGIHGLCWRYSYQVPSYLLVNGTNSIYLSPFRVFSPLQGIMYDYIRLESP 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1549 660 Pfam Polysaccharide lyase family 4, domain III 467 657 IPR029411 -
Alju12g1549 660 Gene3D - 100 335 IPR014718 GO:0030246
Alju12g1549 660 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 36 660 - -
Alju12g1549 660 SUPERFAMILY Starch-binding domain-like 358 454 IPR013784 GO:0030246
Alju12g1549 660 CDD RGL4_N 39 328 - -
Alju12g1549 660 Gene3D - 357 454 - -
Alju12g1549 660 Pfam Polysaccharide lyase family 4, domain II 382 453 IPR029413 -
Alju12g1549 660 SUPERFAMILY Galactose-binding domain-like 464 658 IPR008979 -
Alju12g1549 660 Gene3D - 465 658 - -
Alju12g1549 660 CDD RGL4_C 469 658 - -
Alju12g1549 660 SUPERFAMILY Galactose mutarotase-like 40 327 IPR011013 GO:0003824|GO:0005975|GO:0030246
Alju12g1549 660 Pfam Rhamnogalacturonate lyase family 30 226 IPR010325 -
Alju12g1549 660 CDD RGL4_M 361 457 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1549 Alju-ChrAlju12 36766736 36771666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1549 34 660 Polysaccharide Lyase AT1G09890 52.673 0.0 647