Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1528 ATGGCTCGGGCTACTAACTGGTTATCGTTTTCTTTGTCGCCGATGGAAATGCTGAGGTCTACGAACTCGCAGTACCTTCAATACGACGCCGTTTCTGCCGCCGCTCCTCCTCCTCCTCCTCACTACTTCGTTGATAACTTCTATGCCAATGGTAACACCATCTGCAAACGACTCTATGATTATATTGGTTTTTGATGGGGAAGCCCAAAGTCTCAGGTGGTGTACACTGAAGCAGAGCTTAACGAGAATAAAGAAAGTCATGAAGCTGATCAGAACATGGTGGGATCGTCATCATTTGGCCCAGGTTTCATGGAAGCTCACCAGAATCATCATCAGGTTCCAAAACTCGAGGATTTTCTGGGTGATTCTTCGTCGTCTATTATGCGTTACTCTGACAGCCAAACGGACACTCAAGATTCGTCGACCTTGACCCATATTTACGACCAGGGCTCTGCTTACTTCAGCGACCACCAAGATCTGAAAGTCATCGCTGGGTTCCAAGCTTTCTCGACCAACTCGGGCTCTGAAGTGGATGACTCGGCCTCCATCGGCAAGACTCATGGCGGTGCCGGTGGCGAGTTTGCGACTCACTCGATTGACTCGTCCGGAAATGAGCTGGCCTTCTCAAGCGGCACCACCACCGGAACTTTGTCCCTCTGCGTCACCACCACCACCCCACAATGTGCCGGCGGCGATCAGAAATCCGCCGTTGTTGCCGTGGATTCCGATAGCTCAAAGAAGATGGCCGATACTTTCGGCCAAAGAACTTCGATTTACAGAGGAGTCACCAGACACCGATGGACGGGCAGATATGAAGCGCATCTCTGGGATAACAGCTGTAGGAGAGAGGGCCAGGCCAGGAAAGGGCGTCAAGGTGGATATGACAAAGAAGATAAGGCCGCAAGATCTTATGATTTGGCAGCTCTAAAGTACTGGGGCCCCACTGCCACCACTAACTTCCCTGTTGCCAATTATGCAAAGGAAATGGAGGAGATGAAGCATGTAACAAAGCAAGAATTTATCGCCTCACTGCGAAGGAAAAGTAGCGGATTTTCCAGGGGAGCTTCTATATACAGGGGCGTCACAAGGCATCACCAACAGGGTAGATGGCAAGCTAGAATTGGGCGTGTTGCAGGAAACAAGGATCTGTACCTTGGAACATTTGCCACTGAAGAGGAAGCAGCTGAGGCATACGATATTGCAGCCATTAAGTTTAGGGGTGCAAATGCTGTGACCAACTTTGAGATGAGTAGATATGACGTTGAAGCCATCATGAAGAGTTCTCTTCCCATCGGTGGGGCGGCGAAACGCCTGAAGCTTTCGCTCGAATCCGAGCAGAAAGCGGCACTGAACAATAATAGCCAACAAATCCAATGCATTAACATGAGTAACAACATCAACTTCTCTCCAATTCAGGCAGTTTCGTCTGTCCCTTGTGCAATTCCATTTTATCCGGCTGCTGCTTACCATCACCACAATCTCTTGAACCATTTTCATCCTTCCGATGCCGGCGCTCCCGCAGAATCGGTTGTAACTAACCCTTCGGCGACTCCATATCCTACCCTGCCTGCGCCTGCTGAGTTCTTTATATGGCCTCCACATCAGTCATATTGA 1614 0.4975 MARATNWLSFSLSPMEMLRSTNSQYLQYDAVSAAAPPPPPHYFVDNFYANGNTICKRLYDYIGFXWGSPKSQVVYTEAELNENKESHEADQNMVGSSSFGPGFMEAHQNHHQVPKLEDFLGDSSSSIMRYSDSQTDTQDSSTLTHIYDQGSAYFSDHQDLKVIAGFQAFSTNSGSEVDDSASIGKTHGGAGGEFATHSIDSSGNELAFSSGTTTGTLSLCVTTTTPQCAGGDQKSAVVAVDSDSSKKMADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARSYDLAALKYWGPTATTNFPVANYAKEMEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDVEAIMKSSLPIGGAAKRLKLSLESEQKAALNNNSQQIQCINMSNNINFSPIQAVSSVPCAIPFYPAAAYHHHNLLNHFHPSDAGAPAESVVTNPSATPYPTLPAPAEFFIWPPHQSY 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1528 537 ProSiteProfiles AP2/ERF domain profile. 357 415 IPR001471 GO:0003700|GO:0006355
Alju12g1528 537 FunFam AP2-like ethylene-responsive transcription factor 356 417 - -
Alju12g1528 537 CDD AP2 356 417 IPR001471 GO:0003700|GO:0006355
Alju12g1528 537 CDD AP2 257 323 IPR001471 GO:0003700|GO:0006355
Alju12g1528 537 Gene3D AP2/ERF domain 357 417 IPR036955 GO:0003700|GO:0006355
Alju12g1528 537 Gene3D AP2/ERF domain 258 323 IPR036955 GO:0003700|GO:0006355
Alju12g1528 537 Pfam AP2 domain 258 313 IPR001471 GO:0003700|GO:0006355
Alju12g1528 537 Pfam AP2 domain 357 407 IPR001471 GO:0003700|GO:0006355
Alju12g1528 537 SUPERFAMILY DNA-binding domain 356 417 IPR016177 GO:0003677
Alju12g1528 537 SMART rav1_2 357 421 IPR001471 GO:0003700|GO:0006355
Alju12g1528 537 SMART rav1_2 258 327 IPR001471 GO:0003700|GO:0006355
Alju12g1528 537 PRINTS Ethylene responsive element binding protein signature 259 270 IPR001471 GO:0003700|GO:0006355
Alju12g1528 537 PRINTS Ethylene responsive element binding protein signature 397 417 IPR001471 GO:0003700|GO:0006355
Alju12g1528 537 ProSiteProfiles AP2/ERF domain profile. 258 321 IPR001471 GO:0003700|GO:0006355
Alju12g1528 537 SUPERFAMILY DNA-binding domain 257 322 IPR016177 GO:0003677
Alju12g1528 537 MobiDBLite consensus disorder prediction 180 202 - -
Alju12g1528 537 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 106 454 - -
Alju12g1528 537 FunFam AP2-like ethylene-responsive transcription factor ANT 257 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1528 Alju-ChrAlju12 36539740 36543972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1528 105 537 AP2-EREBP Transcription Factor Family AT5G10510 59.843 3.76e-172 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Alju12g1528 AP2 7.6e-08 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1181 09 35029628 35034387 Alju12g1528 12 36539740 36543972 CCT