Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1516 ATGACGCCCTTGGATTTTGCGTTTGCTCAAATACGCCAAGAAGTTCCACCGATAGCGATCCAACCTTCCTTCGCTTCACTCACTTTTTTGTTCTCTTCGTCTTTTCAGGTGAAGAAGAATATGGCGAGGGAGAAAATTCAGATTAAGAAGATCGACAACGCCACGGCGAGGCAGGTGACGTTCTCGAAGCGACGGAGAGGACTGTTCAAGAAAGCTGAGGAGCTCGCAGTTCTTTGCGATGCAGATGTTGCTCTTGTGATCTTTTCATCTACCGGCAAACTCTTTCACTACTCTAGCTCAAGTTTGAAGGAATTAGTAGAAAGGCGTCATTTGCACTCAAAAAACCTCTCGAAGCTGGACCAGCCGTCTCTTGAGCTGCAGCTAGTTGAGGACAGCAACTACTCGAGTTTGAGCAAGGAGATTACCGAGAAGAGCCGTCAACTAAGGCGGTTGAGAGGAGAGGATCTTCAAGGTTTGAATATTGAAGAATTACAAGAACTTGAGGCGTCACTCGAAGCTGGGTTGAGCCGTGTGATTGAAACGAGGTCACAGACGATGATGGATGAGATCAGTGATCTCGAAAGAAAGGGAATGCAATTAATGGAAGAGAACAAGCGTTTAAGACGTCAAGTGGCAGAAATGCCGAGTGAGATATGCGGTGCTGAGGAAGGTCAGTCATCAGAGTCCGTCGGTAACTTTTGCAGCTACACTGGGCATCCTCAAGACTATGTTGTCAACTCAGACACGTCCCTCAGATTGGGGCTACCATATTCTGGCTGA 780 0.4731 MTPLDFAFAQIRQEVPPIAIQPSFASLTFLFSSSFQVKKNMAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELAVLCDADVALVIFSSTGKLFHYSSSSLKELVERRHLHSKNLSKLDQPSLELQLVEDSNYSSLSKEITEKSRQLRRLRGEDLQGLNIEELQELEASLEAGLSRVIETRSQTMMDEISDLERKGMQLMEENKRLRRQVAEMPSEICGAEEGQSSESVGNFCSYTGHPQDYVVNSDTSLRLGLPYSG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1516 259 Coils Coil 190 210 - -
Alju12g1516 259 ProSiteProfiles MADS-box domain profile. 41 101 IPR002100 GO:0003677|GO:0046983
Alju12g1516 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 97 IPR002100 GO:0003677|GO:0046983
Alju12g1516 259 ProSiteProfiles K-box domain profile. 127 217 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju12g1516 259 ProSitePatterns MADS-box domain signature. 43 97 IPR002100 GO:0003677|GO:0046983
Alju12g1516 259 FunFam Transcription factor, MADS-box 53 123 - -
Alju12g1516 259 Gene3D - 53 123 IPR036879 GO:0003677|GO:0046983
Alju12g1516 259 SUPERFAMILY SRF-like 43 117 IPR036879 GO:0003677|GO:0046983
Alju12g1516 259 Pfam K-box region 132 211 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju12g1516 259 PRINTS MADS domain signature 63 78 IPR002100 GO:0003677|GO:0046983
Alju12g1516 259 PRINTS MADS domain signature 43 63 IPR002100 GO:0003677|GO:0046983
Alju12g1516 259 PRINTS MADS domain signature 78 99 IPR002100 GO:0003677|GO:0046983
Alju12g1516 259 Coils Coil 134 154 - -
Alju12g1516 259 CDD MADS_MEF2_like 42 115 IPR033896 GO:0000977|GO:0045944
Alju12g1516 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 43 205 - -
Alju12g1516 259 SMART madsneu2 41 100 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1516 Alju-ChrAlju12 36405001 36409344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1516 41 259 MADS-box Gene Family AT2G22540 65.560 2.47e-103 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju12g1516 K-box 3.1e-18 No_clan