Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1502 ATGCGAATGCTAACAAGAATCGCAAAACGAATCCTCATCCATCCATTGCTGTGGAGCACTGTGGGCTGTGTGTCAAGCATAGTTGCATTTACCTGTTTTGCCCTGAGTCCCCCTTTCCATGACTTGTTTGGCAGGTGGAATTTGTTCAAAATCGCCATTTACAGCGTCGCTAGTTTGATCCTAACCACCTTGATGCTAGTAATCAAGAAATGCAGGAAAATTACAAGATCAGTTCAGGTGAAAACAATTGTGGGGTTTCTTGTTATGATGCTCACCTCTCTCTTTTCCATTTGGCAAGACCTAAACAGTGAAAAGGAGGACGAGGAAGAGGGATATCGTGGTAGAATCCTAAACATGTGTTCGTTTGGGGCATTTGGTTTGATGTCTCTAAGCTGGTCAAGACAACTTCAGCTTGATTTCGAAGTGGGTATCTCCAATTTCGTAGTTGGGAGTTTCTTGGTGATGCTGATGAAGATGAACTTTATATTGATCCCAGTTGCAGCATTGTTTTGCTACATGTTTATATATTTCCGATACTTCTCAGATCATCAGAGGGAAATGCGTGGCCGCGTTGACTCTAGTGACATAGTGCTGCTTGATGACATAGAGAGTGGTAACCAGAGTGTTGATTTGCAACGAATGAGTAAGACTGAATTCAATCCTCACTGCTTTTCGTTACAAGAGCATGCTCAAAGGTTCGGCATTCCACTTCCCTTTTATCAAACTGTGAAGTTTGGAGTCCCACATGCCCCACAATTTAGATCAGCGGTATCAGTTGATGGGAAGAGCTATACTTCAGAAAATCATTTTCCCAAACGAAAGGCTTCTGAACAATATGTAGCAAAGCTTACTCTTAAGCATATAAAAACAGGTGTCAAAGATGAAGGCCTTTCTCTGATTCTCGAGAGACCAACTTCTTTCAAGTCTATCTTAAAGGACTATGCTAAGAAGATGAATCTGGAGATTACTTGCCACACTGTTCCACGGAAAGGGCGTGCTGGTTTTGAATCGTCTTTGAATTTTAATGGTAAAGACTATATTGGTGATCCAGCAAAAAACGAAATGGACGCGGAGCAATCGGCAGCATGTGCTGCTGTTCTTTCAAATCTAGAAAGCATCCTTCGGATTGCAATTCTTGCCCCTTTCTCCAGACTTTACTCAACACGGAGAGGCATTTTCCAAGAAACTGTGACCTCTTCATCCTCGCTCTTTCCTGTTTCTCGTGTTCACAATCTTCTCCTCCTTAATCTGCCTTCCAATATTCTTCATGAACTTGTGCTTAATCCTCTGGATCTCGCAATGCAAATGCTAATAAAAATCTCAAAACTCATCCTCACTCATCCATTGTTCTGGAGAATTCTGGGCTTCGTGTCAAGCATAGTTGCGTTTACCTGTTTTGCCCTGAGTCCCTCTTTCCATGACTTGTTTGGCAGTTGGAACCTGCTCAAAATCTCCATCTACAGTGTCGCTAGTTTGATCCTAGCCACCTTGATGCTGCTAATTAAGAAATGCAGGAGATTTACAAGATCAGTTCTGGTGAAAGCACATGTGGGTTTTCTGGTTATGATGGTCACCTCTCTCTGTTCCATTTGGCAAGACCTAGTTAGCCAAAAGGAGAAACAGGAAAATGGATCGCGTGGCAGAATCCTAAACATGTGTTCGATTGGGGCCTTTGGTTTGATGTCGCTGAGCTTGTCGAGACAGCTTGAGCTTGGATTCGAAGTGGGTATCTTCAATTTCTCATTTGGGAGTTTCTTAGTGTTGCTGATGAAGATGAACTTCAAATTGGCACCACTTGCAGCAATCTTGTGCTACGTCATTATACATATCCGATCCTTCTCAGACTATTTCATGGAAAAGCTTGGGCGTGTTGACTTTAGTGACACAACACTTAAAGATATAGAGAGTGGTTCCCGCATTATTCATTCGCAACAAATGAGTAAGACTGAATTCAATACTTTACATTCCGATATAGTGGGCACTTATCTTTCTGAAGATGATAATCATCTTCTGAGGTTAGGGAACTGGTGGACACTTGGAGGGCAGAGGGAGATCCACAAGAGGCCCAAGCTGGAGGGCGAAGACGACCTGAAAGCAGAGGCTAAATCTCTGACGTTAGGGAACAAAGCCAGGACGCACGAGTGCTCCATTTGTGGGCTAGAATTCTTGTCGGGGAAAGCACTCGAAGGCCACATGAAGAAGCACGGAGCTGCTCTTCACCATGACACCAGCCAGTTGGCGGCCAAGGTCCCTATTAAGAGCTCCAATAGTACCAAGGCTTCTTCTCCATACTCACTATGTGTACTTTCAATCCTTTCATTCACAACAGTATTGATTTTGATAGTGGTAACCACAGTATTGATTTGCAAGGAATGGGTAAGACTGAATTCAATCCTTACGGCATTTCGTTTTCCTTCTTATGGTTCCTTGACAGAACATTTTATGCACAAAAATCGGTTACAAGAGCATGGTGAAAGGTCCCACATTCCGCTTCCCATTTATCAAGCTGTGAATGTTGGACTCGCACATGCCCCACAATCTAGATCAGCTGTATCATTTGATGGAAAGAGCTATACTTCAGAAAACGTTTTTCCCAGTCGAAAGGCTTCTGAACAAGATTCTATCTTAAATGACTATGCCATGAAGATGAACCTAGAAATTACATACGACACTGTTGATTTTGAATGCTGGGACGGGGATGATCGAAGAAGGGAAAAATGTAGTTTGCTGATGTCTCATGCAGATCTTGGCAGCGAGATTGACGATGCAGAAGGGATTGAGGATGGCACGACAGGTTCGGAAACGCAAGGGGGAGTAAGGGACTACAGGCATATCGGGGAAGTGCTTGATCGGAGTGTAGATGGCGGAGGCAGGGACGTGGAACATGCTCAAAATCGTCATCTACAGTGTCATTTTGATCCTAACCACCTTGATGCTACTAATCAAGAAATGTACGAGATTTTGAAGATCAGTTATGGTGAAAGCACATCATTCTTGTGCTACGTCATTATAAATATCCAATCCTTGTCAGATTTTTTCATGGAAAACCTTAGGCGTGCTGACACTAATGACACAGAACTTGAAGATATAGAAAATGTTCCAGAGCATTTTCAGCACAAAGGGATTTCTGATGATGATGAGGTGGACACTTATCTTCTAGAAGATGATTATGATGTCGGTTGGTAGGATCTCTTTGTCTTGGGTTTGGTTTTGGTTTTGGTTTTGGTTTTGGTTTTGGACATCACCTGGTACGGATATTCTTCATTGCCTGATCAAGATCAGGTTTTGAACTTTGAACATTGA 3303 0.4278 MRMLTRIAKRILIHPLLWSTVGCVSSIVAFTCFALSPPFHDLFGRWNLFKIAIYSVASLILTTLMLVIKKCRKITRSVQVKTIVGFLVMMLTSLFSIWQDLNSEKEDEEEGYRGRILNMCSFGAFGLMSLSWSRQLQLDFEVGISNFVVGSFLVMLMKMNFILIPVAALFCYMFIYFRYFSDHQREMRGRVDSSDIVLLDDIESGNQSVDLQRMSKTEFNPHCFSLQEHAQRFGIPLPFYQTVKFGVPHAPQFRSAVSVDGKSYTSENHFPKRKASEQYVAKLTLKHIKTGVKDEGLSLILERPTSFKSILKDYAKKMNLEITCHTVPRKGRAGFESSLNFNGKDYIGDPAKNEMDAEQSAACAAVLSNLESILRIAILAPFSRLYSTRRGIFQETVTSSSSLFPVSRVHNLLLLNLPSNILHELVLNPLDLAMQMLIKISKLILTHPLFWRILGFVSSIVAFTCFALSPSFHDLFGSWNLLKISIYSVASLILATLMLLIKKCRRFTRSVLVKAHVGFLVMMVTSLCSIWQDLVSQKEKQENGSRGRILNMCSIGAFGLMSLSLSRQLELGFEVGIFNFSFGSFLVLLMKMNFKLAPLAAILCYVIIHIRSFSDYFMEKLGRVDFSDTTLKDIESGSRIIHSQQMSKTEFNTLHSDIVGTYLSEDDNHLLRLGNWWTLGGQREIHKRPKLEGEDDLKAEAKSLTLGNKARTHECSICGLEFLSGKALEGHMKKHGAALHHDTSQLAAKVPIKSSNSTKASSPYSLCVLSILSFTTVLILIVVTTVLICKEWVRLNSILTAFRFPSYGSLTEHFMHKNRLQEHGERSHIPLPIYQAVNVGLAHAPQSRSAVSFDGKSYTSENVFPSRKASEQDSILNDYAMKMNLEITYDTVDFECWDGDDRRREKCSLLMSHADLGSEIDDAEGIEDGTTGSETQGGVRDYRHIGEVLDRSVDGGGRDVEHAQNRHLQCHFDPNHLDATNQEMYEILKISYGESTSFLCYVIINIQSLSDFFMENLRRADTNDTELEDIENVPEHFQHKGISDDDEVDTYLLEDDYDVGWXDLFVLGLVLVLVLVLVLDITWYGYSSLPDQDQVLNFEH 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1502 1100 SMART c2h2final6 713 735 IPR013087 -
Alju12g1502 1100 Pfam Double-stranded RNA binding motif 226 287 IPR014720 -
Alju12g1502 1100 SUPERFAMILY dsRNA-binding domain-like 816 873 - -
Alju12g1502 1100 Gene3D - 808 874 - -
Alju12g1502 1100 SMART DRBM_3 222 289 IPR014720 -
Alju12g1502 1100 SMART DRBM_3 307 370 IPR014720 -
Alju12g1502 1100 SMART DRBM_3 816 880 IPR014720 -
Alju12g1502 1100 PANTHER - 226 368 - -
Alju12g1502 1100 ProSitePatterns Zinc finger C2H2 type domain signature. 715 735 IPR013087 -
Alju12g1502 1100 ProSiteProfiles Zinc finger C2H2 type domain profile. 713 735 IPR013087 -
Alju12g1502 1100 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Alju12g1502 1100 Gene3D - 298 372 - -
Alju12g1502 1100 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 226 290 IPR014720 -
Alju12g1502 1100 Gene3D - 225 288 - -
Alju12g1502 1100 SUPERFAMILY dsRNA-binding domain-like 225 288 - -
Alju12g1502 1100 Pfam C2H2-type zinc finger 713 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1502 Alju-ChrAlju12 36285372 36299455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1502 672 751 C2H2 Transcription Factor Family AT2G37430 35.802 1.06e-08 54.3