Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1499 ATGGATTTTGAGGATCAAGAGGAGCAAGAAGAAGAGATCGGCATGGAGTCACTGGGGATATCTCCGAGAGTGAAAATGCCGATGACCTCCGCCGGTGGTGCCGGAGAAGCTATGGTGTTGCCTCAACCCACAAGGAGTTATTATAACAATAATAATAACAGCAAGGGAAGGTATAGAGAGTGCTTGAAGAACCACGCGGTGGGTCTCGGCGGACACGCGCTTGACGGTTGTGGTGAGTTCATGCCGGCCGGAGTTGAAGGCACACTAGACGCTCTCAAATGCGCTGCCTGTAACTGCCACCGCAATTTCCACCGCAAAGAGACCGAACCATTTTTGTTGACCCCCCATTACCACCACCAGCAGCAGCCGCAGTTCGCGGCGGCATATTATCGAGCTCCAGCAGGGTACTTACACGTGGCAGGGCAGCACAGGGGAGGGCAGGGGACCCTGGCGCTGCCGTCTACTTCGGGAGGAGGTGGCGGGACACAGAGCACTAGAGACGAGCAGGACGACGACGTTTCAAACCCAAGCGGCGGCGGCGGCGGCGGCGGAGGCTCGTCGTCGGCGAAGAAGAGGTTCAGGACGAAGTTCACGCAGGAGCAGAAAGATAAAATGCTGGAACTTGCAGAGAGATTGGGATGGAGGATTCAGAAGCAAGATGAAGAGTTGGTGCAGCAATTCTGTAACGAATTGGGAGTGAAGCGTCAGGTTCTCAAGGTTTGGATGCACAACAACAAGCACACTGTGGGTAAGAAACCCTAG 762 0.5499 MDFEDQEEQEEEIGMESLGISPRVKMPMTSAGGAGEAMVLPQPTRSYYNNNNNSKGRYRECLKNHAVGLGGHALDGCGEFMPAGVEGTLDALKCAACNCHRNFHRKETEPFLLTPHYHHQQQPQFAAAYYRAPAGYLHVAGQHRGGQGTLALPSTSGGGGGTQSTRDEQDDDVSNPSGGGGGGGGSSSAKKRFRTKFTQEQKDKMLELAERLGWRIQKQDEELVQQFCNELGVKRQVLKVWMHNNKHTVGKKP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1499 253 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
Alju12g1499 253 Pfam ZF-HD protein dimerisation region 57 108 IPR006456 -
Alju12g1499 253 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 248 - -
Alju12g1499 253 MobiDBLite consensus disorder prediction 144 192 - -
Alju12g1499 253 MobiDBLite consensus disorder prediction 148 164 - -
Alju12g1499 253 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 107 IPR006456 -
Alju12g1499 253 FunFam Zinc-finger homeodomain protein 2 184 251 - -
Alju12g1499 253 Gene3D - 177 250 - -
Alju12g1499 253 NCBIfam homeobox domain, ZF-HD class 190 246 IPR006455 -
Alju12g1499 253 MobiDBLite consensus disorder prediction 1 24 - -
Alju12g1499 253 SUPERFAMILY Homeodomain-like 177 251 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1499 Alju-ChrAlju12 36244844 36245605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1499 1 249 ZF-HD Transcription Factor Family AT4G24660 47.244 6.39e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Alju12g1499 ZF-HD_dimer 4.7e-29 No_clan