Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1493 ATGGAAGAAGCACTCAGGAGGCTTAACGGGTTAGCCCCGATTCCAGAACCCGTCCCACAACAGGATTTCATCTCCGACCACCCAAAGAAGTGCCCAACCACCACCACCACCACCACCGCCAAGAGGACGGCCAGAGAAAGCGGCGGCACAATGAGGTACCGCGGCGTTCGGCGCAGGCCCTGGGGCCGTTACGCGGCAGAGATAAGAGACCCTCAGTCCAAAGAGCGACGGTGGCTCGGCACTTTCGACACGGCGGAGGAAGCCGCATGTGCCTACGACTGCGCCGCCCGTGCCATGCGCGGCCTGAAAGCTCGCACCAATTTCGTTTACCCCACTTCACCCCCCTCTGCCACCACCGAACATCATCTCTTCCCTCATTTCGCCTTCCCCAAACAACCTCACAATCAAACGAACAATAACAACCTAAACCGTCATAACCAACCTTTAGGGTGGCCTTCTTCTTCTTCTAGTTCTAACTCTCACGTTTCTGATTTTTCTTCAACTTCTAATTCTTCTCTGAACTTGTATCTGTTTCGTGACTACCTGAACTCTGCTTCTAATAACCCATCTTTGGTTGCTTCTGCTCAGCAACTTTACAACCCTGGGAACAACAATATGACATGTTCATGTTCATGTTCTGGTTCCTCGTCCTCCTCTGTCCCAGGTTGCTGTGTTGTGAATTCGGCTGGTGGTGATACGGAGAATTCCAAGATTACTACTGAAGCTGATAATGAAGAATTTGAATTCTTTCCCAGAGAGCACTCAGACTCTGGATTGCTGGAAGAGATAGTTCACAAGTTCTTACCAAAATCAAAGCCAGCAGAGATTCAAATGAAGGAGGAGGCTGTGTCTCTGTCGACACCACAGTTGCTTCCTCCTCCTGAGCCAGTTTATGATCATGGCATGTTCACTTCTTTGTCCTATGAAAGTCTTAGGAATAAGGAGGTGACCAAAGCTGAGGATTATTATAATAATGTGTCTAATTATGATCACCAAGGTTTCTCCATGCAGCAATTTGAGAGCTTTCAGAATGGGTATGGTTACAGCACTGGACAAGGCTTACCTCTTAGAAGCGACCTTCACTTGATGATGAACGAAGCTGCAGGCTACTCCATCATGGAAGATATTTTCCAGCACCCAGAGCTTGTTAATGAATTTGTAGCTAGGATACAAAATGCTTAA 1182 0.4822 MEEALRRLNGLAPIPEPVPQQDFISDHPKKCPTTTTTTTAKRTARESGGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPSATTEHHLFPHFAFPKQPHNQTNNNNLNRHNQPLGWPSSSSSSNSHVSDFSSTSNSSLNLYLFRDYLNSASNNPSLVASAQQLYNPGNNNMTCSCSCSGSSSSSVPGCCVVNSAGGDTENSKITTEADNEEFEFFPREHSDSGLLEEIVHKFLPKSKPAEIQMKEEAVSLSTPQLLPPPEPVYDHGMFTSLSYESLRNKEVTKAEDYYNNVSNYDHQGFSMQQFESFQNGYGYSTGQGLPLRSDLHLMMNEAAGYSIMEDIFQHPELVNEFVARIQNA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1493 393 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Alju12g1493 393 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 40 218 - -
Alju12g1493 393 MobiDBLite consensus disorder prediction 1 49 - -
Alju12g1493 393 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Alju12g1493 393 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Alju12g1493 393 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Alju12g1493 393 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Alju12g1493 393 Gene3D AP2/ERF domain 51 110 IPR036955 GO:0003700|GO:0006355
Alju12g1493 393 MobiDBLite consensus disorder prediction 131 164 - -
Alju12g1493 393 MobiDBLite consensus disorder prediction 128 164 - -
Alju12g1493 393 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Alju12g1493 393 MobiDBLite consensus disorder prediction 27 45 - -
Alju12g1493 393 SUPERFAMILY DNA-binding domain 52 109 IPR016177 GO:0003677
Alju12g1493 393 CDD AP2 52 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1493 Alju-ChrAlju12 36112463 36113644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1493 50 270 AP2-EREBP Transcription Factor Family AT1G24590 44.196 4.51e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju12g1493 AP2 2.9e-12 CL0081