Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1485 ATGCCCATGAATCTATCTCCAAGGATTCCAAAAGCTTCTGAATTGCGCGGCGACCTCATAGCTTTATCCAAAACTGACACCATATCTTCTATATGGTCTGAATGCTCCATTCCATCTTCAATGGCTCTGCTTCTAGGCGGTATTCAGCCTCAGATACTAACTTCCCTTCGTCATGATCATAGAAAACCTTGTATTAGAGTTTGTCGTAGACGCTTCCATTTCGCGGTTAATACTAGAAATAATACTGTTCCTTCCAGTCCTTCCTTTAATCGGAGACGCATACTTGCGAGCCCTCCAAAATCATCGTCCATAGATGGGTTTTCTGTCCAGGAGAATCCAGAAGCTTTAAGTGAAGAAAAAGAAGAAGAGAAAGAGTTTCTGAAGAGGCTTAGGAGATGGTTCAGTTTTCTTCCTTCGATTTTGCCTGGAGGAAGCTGGTGGAACTTCTCCGAAAACGTCGAAATTCAAGATTCAGCTAAACCCGTTACTGTGTGGCGCGCGCTTGCCAAAATGTGGCAACTTGTTTCTCAAGACCGATGGATTATTTTCGCTGCATTCTGTGCTCTGATTCTTGCGGCGGTTTCGGAGATTTCCATACCGCATTTCTTAACAGCATCTATCTTCTCCGCACAGGGTGCGGATGTTCCAGTTTTCCGTCGGAATGTGCTTCTGTTGGTTCTGTTCTGTATAACTTCGGGAATATGCAGTGGGATACGAGGCTGCTGTTTTGGAATTGCAAATATGATACTGGTAAAGAGAATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGACAATGCAACGGTTGGTGATCTGACAAGTAGGCTTGGTGCTGATTGCCAACAAGTTTCGCGTGTTATTGGAAATGATCTTAACTTGATATTGCGCAATGTTCTTCAGGGAACAGGTGCATTAACCTACTTGTTATTTTTGTCCTGGCCACTTGGTTTATTTACATTGATGATATGCTCTATATTATCAGCAGTTTTGTTACTTTATGGAAGGTATCAGAAAAAGGCTGCAAAGTTGATCCAAGAAGTCACTGCTTCCGCCAATGAAGTTGCACAAGAGACATTTTCTCTGATCAGAACTGTCCGCGTTTATGGAACAGAAGAAGAAGAACTTGGAAGGTACAAATGGTGGCTGGAAAAGTTAGCTGATATAAGCTTGAGACAAAGTGCTGCTTATGGATTTTGGAATTTCAGCTTCAATAATCTTTATCATTCAACTCAGGTTATCGCCGTGCTGTTTGGAGGAATGTCTATTCTAGCAGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGCTTATTTATTCAACCTGGTGGGTGGGAGACAGTATATCATCTTTGATGCAATCTGTTGGGGCTAGTGAAAAAGTATTCCAATTGATGGATCTCTTACCTAGCAGCCAGTTCCATACAAAAGGAATAAAGCTGCAGAGGTTAACTGGGAATATTGAATTTATAGATGTATCTTTTCACTATCCTTCAAGGGCAACGGTATCTGTGGTGCATCATGTAAATTTTGCTGTTCGACCTGGTGAAGTGGTTGCAATAGCTGGTCTTAGTGGCAGTGGAAAAAGTACACTGGTGAACCTTCTGCTCCGCCTATATGAGCCAACTGATGGTCAGATTTTGATTGATGGCGTCCCTCTTAAAGAGTTGGACATCATGTGGTGGAGAGAAAGAATTGGATTTGTTGGACAGGAGCCTAAGCTCTTCAGAATGGATATTAGTTCAAACATAAGATATGGATGCACTCGGGAGATTACGCAAGAGGACGTTGAATGGGCTGCAAAGCAAGCTTATGCCCATGGCTTCATCTCAGCACTTCCTAATGGCTATGAAACACTTGTTGATGATGATTTGTTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGAGCTATTCTTAGGGATCCAAAAGTATTGATCCTTGATGAGGCCACTAGTGCACTGGATGCTGAGAGTGAACATAATGTCAAGGGTGTTCTTCGTTCTGTTAAAAATGACTCCCTGAGTATGAGAAGTGTGATTGTAATTGCACACAGGCTTTCGACCATACAAGCAGCAGACAGGATTGTGGTAATGGATAGTGGTAAAATTGTTGAGATTGGGAGTCACAGAGAGCTTCTCTTAAGAGATGGTTTGTATGCACGGTTGACCGGTAAACAAGTTGACTCAGTGGCATGA 2232 0.4203 MPMNLSPRIPKASELRGDLIALSKTDTISSIWSECSIPSSMALLLGGIQPQILTSLRHDHRKPCIRVCRRRFHFAVNTRNNTVPSSPSFNRRRILASPPKSSSIDGFSVQENPEALSEEKEEEKEFLKRLRRWFSFLPSILPGGSWWNFSENVEIQDSAKPVTVWRALAKMWQLVSQDRWIIFAAFCALILAAVSEISIPHFLTASIFSAQGADVPVFRRNVLLLVLFCITSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNATVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGTGALTYLLFLSWPLGLFTLMICSILSAVLLLYGRYQKKAAKLIQEVTASANEVAQETFSLIRTVRVYGTEEEELGRYKWWLEKLADISLRQSAAYGFWNFSFNNLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDSISSLMQSVGASEKVFQLMDLLPSSQFHTKGIKLQRLTGNIEFIDVSFHYPSRATVSVVHHVNFAVRPGEVVAIAGLSGSGKSTLVNLLLRLYEPTDGQILIDGVPLKELDIMWWRERIGFVGQEPKLFRMDISSNIRYGCTREITQEDVEWAAKQAYAHGFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKVLILDEATSALDAESEHNVKGVLRSVKNDSLSMRSVIVIAHRLSTIQAADRIVVMDSGKIVEIGSHRELLLRDGLYARLTGKQVDSVA 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1485 743 SUPERFAMILY ABC transporter transmembrane region 171 480 IPR036640 GO:0005524|GO:0016020
Alju12g1485 743 ProSitePatterns ABC transporters family signature. 636 650 IPR017871 GO:0005524|GO:0016887
Alju12g1485 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 738 IPR027417 -
Alju12g1485 743 FunFam Multidrug ABC transporter ATP-binding protein 490 742 - -
Alju12g1485 743 Gene3D ABC transporter type 1, transmembrane domain 149 328 IPR036640 GO:0005524|GO:0016020
Alju12g1485 743 SMART AAA_5 525 714 IPR003593 GO:0016887
Alju12g1485 743 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 498 737 IPR003439 GO:0005524
Alju12g1485 743 PANTHER ABC TRANSPORTER B FAMILY 164 734 IPR039421 -
Alju12g1485 743 Pfam ABC transporter 517 664 IPR003439 GO:0005524
Alju12g1485 743 Pfam ABC transporter transmembrane region 183 449 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju12g1485 743 Gene3D ABC transporter type 1, transmembrane domain 329 495 IPR036640 GO:0005524|GO:0016020
Alju12g1485 743 CDD ABC_6TM_TAP 185 472 - -
Alju12g1485 743 Gene3D - 496 738 IPR027417 -
Alju12g1485 743 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 183 464 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju12g1485 743 FunFam ABC transporter B family member 26, chloroplastic 164 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1485 Alju-ChrAlju12 36036528 36043349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1485 253 738 Calmodulin-binding Proteins AT2G36910 32.929 2.08e-68 243