Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1459 ATGTTCGGATCAGATGACCTGCTTTCCGCCATTACCGAAGCTGAGCCGCCGTCTGTTGCCCCTGAAATTCAACCTGACGACGATGCCTCTTCCTCTCTCATCAAGGCTAAAATCGCTTCTCATCCTCACTATCCTCGTCTTCTCCAAGCTTTCATCGATTGTCAGAAGGTAGGGGCGACTCCAGAAATAGCGTGTCTCTTAGATGAAATCAAGCGAGAAAATGATGTTCGTAAGCGAGAGGTTGTTTCCACGTGCTTCGGTGACGATCCCGAGCTCGACGAGTTCATGGAAACGTATTGCGATCTTCTGATAAAGTATAAATCTGACCTTTCCCGGCCTTTTGACGAAGCCACTACTTTCCTCAACGACATCGAAATCCAGCTCAGCCATCTCTGCTCTGGTGCCTCCGTTCCTAACCTCTCCGATGATGGAGGCATGTCTTCAGAAGATGGTGATGCAGAAGATGCGCGGGGGGAAGATCGGGAGCTAAAGGATAGGCTTTTAAATAAGTTTGGGGGTCGGATTAGTAGTTTGAAATTGGAGTTCTCCAAGAAGAAGAAGAAAGGCAAACTTCCCAAGGAAGCTAGGCAAACGCTTCTTGACTGGTGGAATGTTCACTACAAATGGCCTTACCCCACGGAAGGGGATAAGATAGAACTGGCAAAGTCAACGGGGCTGGATCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGGAAGCGTCACTGGAAACCCTCCGAGAACCTTCACTTCTCTGTTACGGATGCTTTCACTGGAGGCTTCTACTCCGATCCTCGTGTATGA 804 0.4801 MFGSDDLLSAITEAEPPSVAPEIQPDDDASSSLIKAKIASHPHYPRLLQAFIDCQKVGATPEIACLLDEIKRENDVRKREVVSTCFGDDPELDEFMETYCDLLIKYKSDLSRPFDEATTFLNDIEIQLSHLCSGASVPNLSDDGGMSSEDGDAEDARGEDRELKDRLLNKFGGRISSLKLEFSKKKKKGKLPKEARQTLLDWWNVHYKWPYPTEGDKIELAKSTGLDQKQINNWFINQRKRHWKPSENLHFSVTDAFTGGFYSDPRV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1459 267 ProSiteProfiles 'Homeobox' domain profile. 182 245 IPR001356 GO:0003677
Alju12g1459 267 SMART KNOX2_2 82 133 IPR005541 GO:0003677|GO:0005634
Alju12g1459 267 CDD homeodomain 194 246 IPR001356 GO:0003677
Alju12g1459 267 Pfam Homeobox KN domain 202 241 IPR008422 GO:0003677|GO:0006355
Alju12g1459 267 Pfam ELK domain 162 183 IPR005539 GO:0003677
Alju12g1459 267 ProSiteProfiles ELK domain profile. 162 182 IPR005539 GO:0003677
Alju12g1459 267 SMART ELK_2 162 183 IPR005539 GO:0003677
Alju12g1459 267 Gene3D - 180 251 - -
Alju12g1459 267 Pfam KNOX1 domain 34 75 IPR005540 GO:0003677|GO:0005634
Alju12g1459 267 Pfam KNOX2 domain 86 132 IPR005541 GO:0003677|GO:0005634
Alju12g1459 267 SMART KNOX1_2 32 76 IPR005540 GO:0003677|GO:0005634
Alju12g1459 267 SMART HOX_1 184 249 IPR001356 GO:0003677
Alju12g1459 267 ProSitePatterns 'Homeobox' domain signature. 220 243 IPR017970 GO:0000981|GO:0006355
Alju12g1459 267 SUPERFAMILY Homeodomain-like 183 256 IPR009057 -
Alju12g1459 267 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 38 251 - -
Alju12g1459 267 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1459 Alju-ChrAlju12 35805713 35811313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1459 1 264 Homeobox Transcription Factor Family AT1G23380 68.683 5.44e-128 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Alju12g1459 KNOX2 6.9e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1093 09 33693745 33706449 Alju12g1459 12 35805713 35811313 CCT