Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1421 ATGAAAGGAGGAGAAGGGAAGGAGTACAAGAAGGGACTGTGGACGGAGGAAGAAGACAGGGTTTTGACGGAATATATTAGGGTTCATGGAAGAACCCACTGGAACCGCATTTCCAAAGTCACTGGTTTAATGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTGAACTATCTGAGTCCAAACGTCAAACATGGAAGTTTCTCTGAGGAAGAAGACGATCTCATCATTCGTCTTCATAATCTCCTTGGAAACAGGTGGTCTCTAATAGCAGGAAGGGTACCTGGAAGAACAGACAACCAAGTAAAGAATCATTGGAACACTCATTTGTGCAAGAAACTTGGTATCACTAAGAAAACCAGAAAACCTAGTAAGGACAAGGTATCTGCAAAACCTAGGGCTTCACAAACAGAAGAGGCTCAAAATGTTCACATGCCTTCAAGTTCTGTGGATATTATTCCTCTCACTCTCAACAACAAAGAAGACAAAGAAGCTGAGGTACAATTAGGCCAGGGAAGCTATGTGAACAACAATCCCACAACAAACAATATTGATGAAGCACAACATTGTTGGCCACCCACAGAAACGGATGATCATCACTTTGATCAAGCTTTTATGTTTGATGATGATCATAATTTTGTTCTACATAGTCCTCCTAGGTTAATGGAATTTTTTGATGGATTTGATGTAATTTAG 693 0.4084 MKGGEGKEYKKGLWTEEEDRVLTEYIRVHGRTHWNRISKVTGLMRSGKSCRLRWLNYLSPNVKHGSFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGITKKTRKPSKDKVSAKPRASQTEEAQNVHMPSSSVDIIPLTLNNKEDKEAEVQLGQGSYVNNNPTTNNIDEAQHCWPPTETDDHHFDQAFMFDDDHNFVLHSPPRLMEFFDGFDVI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1421 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 176 - -
Alju12g1421 230 CDD SANT 14 58 IPR001005 -
Alju12g1421 230 Gene3D - 65 143 - -
Alju12g1421 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Alju12g1421 230 MobiDBLite consensus disorder prediction 133 149 - -
Alju12g1421 230 Pfam Myb-like DNA-binding domain 65 109 IPR001005 -
Alju12g1421 230 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Alju12g1421 230 Gene3D - 5 64 - -
Alju12g1421 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Alju12g1421 230 CDD SANT 66 109 IPR001005 -
Alju12g1421 230 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Alju12g1421 230 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Alju12g1421 230 FunFam Transcription factor WER 65 139 - -
Alju12g1421 230 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Alju12g1421 230 SMART sant 63 111 IPR001005 -
Alju12g1421 230 SMART sant 10 60 IPR001005 -
Alju12g1421 230 MobiDBLite consensus disorder prediction 117 149 - -
Alju12g1421 230 FunFam Myb transcription factor 11 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1421 Alju-ChrAlju12 35454585 35457695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1421 2 227 MYB Transcription Factor Family AT5G40330 45.374 6.58e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju12g1421 Myb_DNA-binding 1.2e-13 CL0123