Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1398 ATGCCATATTTTGCAATGTCTTGGGTTCACTCTCAAGTTCTGCAGAACAAAGGTCACTTGGCTGTCCAGCCAATTCTTTCTCCATCTCCTTCTTCTCCTCCATTGCCTTACATTTCTAACTTCCAGAAGCCAATAAGCCCACCTCCAGTTTCTTCATCTGGGAACAAAATAAGTCCAGCAGTTCTTTTCATCATAGTTGTTCTAGCTATTGTGTTTTTCATTTCGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTTCATCAATTTCTCAATCCAATAGATACCCAGATATGTCTGAATCAGATGCTTACCAGAGGCAGTTACAGCAGCTGTTTCATCTTCATGATTCAGGACTGGATCAGGCTTTCATAGATGCTCTTCCTGTCTTCTTTTACAAGGAGATAATTGGCTTGAAAGAGCCATTTGATTGTGCTGTTTGCCTTTGTGAATTCTCAGATCATGACAAGCTTAGGTTGCTACCTATGTGCAACCATGCTTTTCACATTGACTGTATAGACACATGGTTGTTGTCGAATTCAACTTGTCCTCTCTGTAGAGGGACTCTGTATTCACCAGGATTTCCCTTTGAAAGCCCTGATTTTAACTTTGAAGAGACAAGGGAAGAAGACGGGGTTTCAGCAGGCACTGTTGGAGGTGATGCTGCTTCTGTTCACAAACATGCTGAAAATCACATTATGAGTGGAAGAAGGGTGTTTTCTGTGAGACTTGGAAAATTCAGAAGCTCAAATACCAGACAAGGAGTAGAAAAATGTGAAGGAGAGAGCAGTGCTAGTAGTAGTAATTTGGATGCAAGGAGATGCTATTCAATGGGGTCTTTCCAGTATGTTGTTGCTGATTCAGATTTAAGAGTAGCTTTATGCCCCAATAGGGGTGATGTGAGTAGTGGCAGTATGAGACAGTTGAAAGTGCGAGTAGCTCAAATTGGGAATAATCCCTCTGCTGATTCTGACTTTGAAGACAAAAAACTCAACATTGCAAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGTTATGGTCTAAGAAGGATAAATTACCAAGTTCTTCAGTTACCCATATGGGAAATTCTACTAATGTCACTGCAAATTTGCCTTCGATGAATAGAACTAGAGGTACATGA 1158 0.4093 MPYFAMSWVHSQVLQNKGHLAVQPILSPSPSSPPLPYISNFQKPISPPPVSSSGNKISPAVLFIIVVLAIVFFISGLLHLLVRFLIKHRSSSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFSDHDKLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGTLYSPGFPFESPDFNFEETREEDGVSAGTVGGDAASVHKHAENHIMSGRRVFSVRLGKFRSSNTRQGVEKCEGESSASSSNLDARRCYSMGSFQYVVADSDLRVALCPNRGDVSSGSMRQLKVRVAQIGNNPSADSDFEDKKLNIARKGESFSVSKIWLWSKKDKLPSSSVTHMGNSTNVTANLPSMNRTRGT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1398 385 Pfam Ring finger domain 148 191 IPR001841 -
Alju12g1398 385 SMART ring_2 149 190 IPR001841 -
Alju12g1398 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 52 350 - -
Alju12g1398 385 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Alju12g1398 385 FunFam RING-H2 finger protein ATL46 111 196 - -
Alju12g1398 385 SUPERFAMILY RING/U-box 128 197 - -
Alju12g1398 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 196 IPR013083 -
Alju12g1398 385 MobiDBLite consensus disorder prediction 361 385 - -
Alju12g1398 385 CDD RING-H2_EL5-like 148 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1398 Alju-ChrAlju12 35216313 35217470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1398 50 363 C3H Transcription Factor Family AT2G18650 40.401 1.07e-58 194
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g1398 12 35216313 35217470 Alju12g1398 12 35216313 35217470 ECH