Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1369 ATGGTTCTTTCCCGTTCCTCTTTGATGCTACATCTCCAGATACCATCAATTCGATCCCATTTCTTCTCCCATTTTAAGCATACACACTCCTTCTTCTCCACTTCTTCGCCTTCTTTGGTTGATGTTCCCTACGTTTCGCTTTATCGCCCTCGCCAACGGCTATTCCGGGCGTTCGGGAGTACCGTCGTGGCGGTAGCAGATGCAAAAGGGAGAGACACATTCTTGGCGGAAGAAAATGTTTCGTGGAATTCACTTGGTCTATCTGATGCCATTTCCCGAGCTCTCTCTAGTATTGGTCTCGATAGGCCATCTCTTGTCCAGGCTGCTTCTATACCATCTGTGATTTCTGGAAAGGACGTGGTTATTGCAGCAGAGACTGGTAGTGGTAAAACACACAGTTACCTAGTTCCACTAATTAATAGGCTACGAGGGTCCAACAACAATTCTGAAAATACTGTTGATAATCAAAAAGAGTCTCTCTGTAAGATTCTGCTGGTTCTGTGTCCAAATGTACAACTCTGTGAACAAGTAGTTCAAATGGCGAACAGTATTTGTGGGGACAATGGTGCACCGATTGTTAGTGTGGCAGCCATTTGTGGCAGACAGGGATGGCCAATTCGTGAACCAGATATCATTGTGACAACACCTGTTGCTCTCCTAAACTATGTTGAGCAAAGCAGAAACCGTCGAATGGAATTCATGCACAGTGTTAAATATGTGGTATTTGATGAAGCTGATATGCTTCTCTGTGGGAGTTTCCAAAATAAAGTGATTCGTCTGATAAACTTGCTTCGCTTTGATGAAAAACTATTATCTCAATCAAAAGAACCAGTATCAGAGTTACCATTGGAGCTAGAATCCACCTTGTCATCACACAGTGCTGTAGATGTTGAACAGAAACAGCCCACTGAAGACACCATCTCAGAAGATGGGAATGATGATACCCATATGGTTGACACCAATGATGAAGCTGGTTCAATCAAAAGAAGAGATTGGAGGAGAGTGAGGAAATATTATGAGCGTAGTAAGCAGTACATTTTTGTTGCAGCCACACTTCCTGTGAACGGGAAGAAAACAGCTGGTGCAATATTAAAACATATGTTTCCTGATGCCGAGTGGGTTAGTGGAAACTATCTTCATTGTCACAACCCAAGATTGGAGCAGAGGTGGGTTGAAGTTACTGTTGAGAGACAGGTGGATGAACTCATAAAAGCTGTGAAACAAGGTTTCAGTCAAGATTTGGATAGTTTTGGGGGCATTTCTCGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTGGTCAGATCTGGGATTGAATGTTTACGCTATCATAAGGAATGCACTTTGGATGAGCGATCTAAAGCCTTAGTCGAATTCCGAGAGAAAGGTGGTGTTCTCGTATGTACTGATGCAGCTGCTCGTGGTGTTGATATTCCTAACGTCTCACATGTTATCCAGGCGGATTTTGCTAGTTCTGCTGTAGACTTCTTGCATAGGGTTGGTAGAACTGGTCGAGCCGGTCAATTTGGACTTGTTACTAGCATGTACACTGAATCTAACAGGGAGCTTGTTGATGCTGTTCGCCGAGCAGGGGAACTTGGTCGACCTGTGGAGAGAGCGTTTAGCAGGAAAAGAAGTTTCCGTAACAAGATCAAGAAGAGGGCGTTGAACCTAGTCAGAGATTCAGATTCGGACATGGTTAAAGAGAGTGCTCTGGCTTGA 1743 0.44 MVLSRSSLMLHLQIPSIRSHFFSHFKHTHSFFSTSSPSLVDVPYVSLYRPRQRLFRAFGSTVVAVADAKGRDTFLAEENVSWNSLGLSDAISRALSSIGLDRPSLVQAASIPSVISGKDVVIAAETGSGKTHSYLVPLINRLRGSNNNSENTVDNQKESLCKILLVLCPNVQLCEQVVQMANSICGDNGAPIVSVAAICGRQGWPIREPDIIVTTPVALLNYVEQSRNRRMEFMHSVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSQSKEPVSELPLELESTLSSHSAVDVEQKQPTEDTISEDGNDDTHMVDTNDEAGSIKRRDWRRVRKYYERSKQYIFVAATLPVNGKKTAGAILKHMFPDAEWVSGNYLHCHNPRLEQRWVEVTVERQVDELIKAVKQGFSQDLDSFGGISRTMVFANTVEAVEAVAKILVRSGIECLRYHKECTLDERSKALVEFREKGGVLVCTDAAARGVDIPNVSHVIQADFASSAVDFLHRVGRTGRAGQFGLVTSMYTESNRELVDAVRRAGELGRPVERAFSRKRSFRNKIKKRALNLVRDSDSDMVKESALA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1369 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 526 IPR027417 -
Alju12g1369 580 Gene3D - 387 579 IPR027417 -
Alju12g1369 580 CDD DEADc 91 271 - -
Alju12g1369 580 SMART helicmild6 434 514 IPR001650 -
Alju12g1369 580 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Alju12g1369 580 SMART ultradead3 99 389 IPR014001 -
Alju12g1369 580 Gene3D - 64 368 IPR027417 -
Alju12g1369 580 Coils Coil 579 580 - -
Alju12g1369 580 MobiDBLite consensus disorder prediction 298 320 - -
Alju12g1369 580 CDD SF2_C_DEAD 386 523 - -
Alju12g1369 580 MobiDBLite consensus disorder prediction 290 320 - -
Alju12g1369 580 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 90 548 - -
Alju12g1369 580 Pfam DEAD/DEAH box helicase 106 270 IPR011545 GO:0003676|GO:0005524
Alju12g1369 580 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 370 IPR014001 -
Alju12g1369 580 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 566 IPR001650 -
Alju12g1369 580 Pfam Helicase conserved C-terminal domain 421 514 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1369 Alju-ChrAlju12 34915939 34921153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1369 329 540 Eukaryotic Initiation Factors Gene Family AT5G11200 28.279 8.00e-13 68.9