Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1346 ATGAAGAGGTCCAGAGACGATGGTTATATGAGCTCTCAACTTAAACGGCCCATGGTGTCTTCCCGAGGAGAAACATCGGGGCAGCCCCAGGTGATGGCTGGAAGTGCTCAAAAACTCACAACAAATGATGCCTTAGCATATCTCAAGGCAGTAAAGGAAATCTTTCAAGATAAAAGGGAGAAATATGATGATTTTTTAGAAGTCATGAAGGATTTCAAGGCTCAAAGAGTTGATACTGTGGGTGTCATTGCAAGAGTGAAGGATCTGTTTAAAGGGCACAGAGATCTAATTTTGGGATTTAACACTTTCTTGCCCAAGGGGTATGAAATCACACTTCCTTTGGATGATGAACAACCTGTGCAAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTCAACAAAATCAAGTCTCGCTTTCAAGGTGATGATCATGTCTACAAGTCGTTTCTAGACATATTGAATATGTACAGAAAGGAGAACAAGTCTATTTCTGAGGTCTACCAGGAGGTTGCCTCACTTTTCCATGACCACCCAGATCTTCTTGATGAGTTTACACATTTTCTTCCTGATACTTCAGCAACAACATCTACACATTATGCTGCTTCTCGGAACTCTATGCTTAGGAGCTCTGCAGTGCCGAGGCAAATGAGTGTTGAAAAGAGAGAAAGGACTGTGGATTCTCATGGTGATCATGACCTTAGTGTTGATCGTTCTGATCCAGATCATGACAGAGTTATGATTAAGGCAGAAAAGGAGCAGAGGAGGCGTGCTGAGAAGGAAAAGGACCTCAAAGAAGAGAGGGATAGGAGAGATCGGGAACGGGATGATAGAAATTATGGGCCTGATGGTAATCTCCCGCCCAAACGGAAATCTGGTCAGAGGACAGATGACACTGGTGCTGAACCATTGCATCAAGGTGGCGATTCTGATGAAAATTTTAGCATGCGCCCTATGCCATCCACCTGTGATGACAAAAGTTCAGTGAAGAGTATGTATAGTCAAGAGTTTGCTTTCTGTGAAAAAGTCAAGGAGAAATTACGAAATCCTGAAGTTTATCAGGAATTTTTGAAGTGCCTACATATCTATAGCAGGGAAATAATTACCCGACAAGAATTGGAAACCTTGGTGGGTGATTTACTGGGAAAATATCCAGACCTTATGGAAGGGTTTCATGAATTTTTGTCCAGATGTGAGAAGAATGAGGGATTTCTTGCGGGTGTAATGAATAAAAAGTCCTTTTGGAATGAAGGGATTGCATTTAAACCTGCAAAGGTTGAGGACAAGGATAGAGATAGACCTCGAGATCATGATAGGGATGATCGGATTAAAGAAAGAGATCGTGAACTCCGAGAAAGGGACAAGTCTTCTGCTTTTATTAGCAAGGATGTTTCAGGTCCTAAGATGTATCCATATTCCAGCAAGGATAAGTATTACATGAAACCTATAAATGAGCTAGACCTTTCTAACTGTGAGCAATGCACTCCCAGCTACCGTCTCCTACCAAAAAATTATCCGATACCCATGGTTAGCCAGAGAACCGAGCTTGGTGCTGAAGTAGTGAATGATCATTGGGTTTCTGTAACTTCAGGAAGTGAAGATTATTCTTTTAAACACATGCGCAAAAATCAGTATGAGGAGAGCCTCTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTGACGACAAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATATTATTAAATCAGATAGCCCTATTCGTCTTGAGGATCACTTGACAGCTCTAAATCGAAGGTGCATTGAACGATTATATGGTGATCATGCTCTTGATGTGATGGAGGTGTTGAGAAAGAATGCACCTCTAGCTTTACCTGTTATATTAAGCCGTTTGAAGCAGAAACAAGAAGAGTGGGCTAGGTGCCGTGCAGATTTTAATAAAGTTTGGGCTGAAATATATGCCAAGAATTATCACAAATCTCTTGATCATCGCAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACAAAAGCCTTAGTGGCCGAAATAAAAGAGATTAGTGAGAAGAAACACAAAGAAGATGATGTTCTTCTTGCAATTGCCGCTGGAAATAGACGACCTATTATTCCAAATTTGGAATTTGAGTATTCCGACCCAGATATTCATGAAGATTTGTATCAACTCATAAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCAATGCTCGGTGTTCCTTCTCGACCCCAGGGTGCTGAGGATACAGAAGATGTCGTCAAGGCTAAGCATAGTTCTGTCAAAGGTGGCACTGCAAGTTTTGGTGGCAGTGATGGTAGTCCTGGTGTAGTTGCAAATGTAATAAATTCAAGACAATTAAATACATCTGGAAATGGGGATGAAAGTATTTCATTAGAACAGTCAAATTCCAAGACTGAAACTTCGGATCATAGTAAACATCATGAGGGAACGCATATAAATTCATCCATGCCTGATGAGGTATTGGCGGCCAACAAACAAGGTCATTCCAATGAGCGGTTGGTGAATGCTAATGCCTTAATGGCTTCTGGAATGGAACAAAGTAATGGGAGAACAAACATAGATAATGCATCAGGGCTTACTGCTACTACCTTAAGACCTGGTAATGCTGCTGCTGAGGGAGGACATTTTCCTTCATCAGAGGTTGGCGATTCTACAAGACCAGCTACTCCTGTAAATGGGGCCATCACAGAAAGCAACAAAGTTCACAGGTACCAAGAAGAACCTGCTGGGCAATTCAAAACTGAAAGAGAAGAGGGTGAACTTTCTCCTAATGGAGATTTTGAGGATAACTTTGCAGCATATGGAGATGCTGGTTTAGTAGCAGTAGGGCATAAAGGAAAGAATGGTGGTGTGAGTATGCAATACCAAAATAGACGTGAAGAAGGTTGTGGTGAGGCAGCAGGAGAAAATGATGCTGATGTTGATGAAGGCGAAGGAAGTCCTCATAGGTCATCACAGGACAGTGAGAATGCTTCTGAAAATGGTCATGTTTCGGGAAGTGAGTCTGCTGATGGTGAGGAGTGTTATCAAGAAGAGCATGATGAGGATGAGGAACATGATAACAAGGTTGAGAGTGAGGGTGAGGCTGAAGGAATGGCTGATGCCAATGATGTGGAAGGAGATGGAATCTCATTGCCATTTTCGGAACGCTTTTTGCTATCTGTAAAGCCACTGGCAAAGCATGTTCCCCCTGTGTTGCATGAGAAAGAAAGGGTTTCTAGAGTTTTTTATGGAAATGATTCCTTTTATGTGCTTTTTAGGCTTCACCGAACATTGTATGAGAGGATACAGTCAGCAAAGTTGAACTCATCATCTGCAGATAGGAAGTGGAGGGCTTCAAATGATGTAAACTCGAATGATCAATATGGCAGATTCATGACTGCCCTTTATAACCTACTGGATGGTTCTTCTGACAACACAAAATTTGAGGATGACTGCCGAGCTATTATTGGAACTCAGTCATATGTGTTATTTACATTAGACAAGTTGATATATAAGCTTGTTAAACAGCTGCAAGCTGTTACTACTGATGATGTGGATAACAAACTTCTCCAACTTCATTCATACGAGAAATCAAGAAAATCTGGAAGATTTTTTGATATGGTTTATTATGAAAATGCTCGAGTTCTTCTTCATGATGAAATGATATACCGTATTGAATGTTCATCTACGCCAACACGATTATCTATTCAGTTGATGGACTATGGACATGATAAGCCTGAAGCAACTGCTGTGTCTATGGACCCTAACTTTTCATCCTATTTGCACAATGACTTCCTTTCTGTTTTTCCTAAAAAAAAGAAGTCAGGAATTTTCCTGAAGAGAAATAAACGCAAATATGCCTGTGGCGATGAACTTTCAAGCCAGGCCATGGAAGGATTACAGGTCATCAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTTTCGTACATTATGTCCTGA 4053 0.4069 MKRSRDDGYMSSQLKRPMVSSRGETSGQPQVMAGSAQKLTTNDALAYLKAVKEIFQDKREKYDDFLEVMKDFKAQRVDTVGVIARVKDLFKGHRDLILGFNTFLPKGYEITLPLDDEQPVQKKPVEFEEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVASLFHDHPDLLDEFTHFLPDTSATTSTHYAASRNSMLRSSAVPRQMSVEKRERTVDSHGDHDLSVDRSDPDHDRVMIKAEKEQRRRAEKEKDLKEERDRRDRERDDRNYGPDGNLPPKRKSGQRTDDTGAEPLHQGGDSDENFSMRPMPSTCDDKSSVKSMYSQEFAFCEKVKEKLRNPEVYQEFLKCLHIYSREIITRQELETLVGDLLGKYPDLMEGFHEFLSRCEKNEGFLAGVMNKKSFWNEGIAFKPAKVEDKDRDRPRDHDRDDRIKERDRELRERDKSSAFISKDVSGPKMYPYSSKDKYYMKPINELDLSNCEQCTPSYRLLPKNYPIPMVSQRTELGAEVVNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIIKSDSPIRLEDHLTALNRRCIERLYGDHALDVMEVLRKNAPLALPVILSRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALVAEIKEISEKKHKEDDVLLAIAAGNRRPIIPNLEFEYSDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAKHSSVKGGTASFGGSDGSPGVVANVINSRQLNTSGNGDESISLEQSNSKTETSDHSKHHEGTHINSSMPDEVLAANKQGHSNERLVNANALMASGMEQSNGRTNIDNASGLTATTLRPGNAAAEGGHFPSSEVGDSTRPATPVNGAITESNKVHRYQEEPAGQFKTEREEGELSPNGDFEDNFAAYGDAGLVAVGHKGKNGGVSMQYQNRREEGCGEAAGENDADVDEGEGSPHRSSQDSENASENGHVSGSESADGEECYQEEHDEDEEHDNKVESEGEAEGMADANDVEGDGISLPFSERFLLSVKPLAKHVPPVLHEKERVSRVFYGNDSFYVLFRLHRTLYERIQSAKLNSSSADRKWRASNDVNSNDQYGRFMTALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVTTDDVDNKLLQLHSYEKSRKSGRFFDMVYYENARVLLHDEMIYRIECSSTPTRLSIQLMDYGHDKPEATAVSMDPNFSSYLHNDFLSVFPKKKKSGIFLKRNKRKYACGDELSSQAMEGLQVINGLECKIACSSSKVSYIMS 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1346 1350 SUPERFAMILY PAH2 domain 121 192 IPR036600 GO:0006355
Alju12g1346 1350 Coils Coil 564 584 - -
Alju12g1346 1350 MobiDBLite consensus disorder prediction 14 33 - -
Alju12g1346 1350 MobiDBLite consensus disorder prediction 1039 1057 - -
Alju12g1346 1350 MobiDBLite consensus disorder prediction 201 328 - -
Alju12g1346 1350 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Alju12g1346 1350 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Alju12g1346 1350 MobiDBLite consensus disorder prediction 1 33 - -
Alju12g1346 1350 MobiDBLite consensus disorder prediction 767 850 - -
Alju12g1346 1350 Pfam Sin3 family co-repressor 493 584 IPR013194 -
Alju12g1346 1350 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Alju12g1346 1350 PANTHER SIN3B-RELATED 37 1254 IPR039774 GO:0003714
Alju12g1346 1350 MobiDBLite consensus disorder prediction 427 451 - -
Alju12g1346 1350 SMART hdac_interact2seq4b 491 591 IPR013194 -
Alju12g1346 1350 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Alju12g1346 1350 MobiDBLite consensus disorder prediction 994 1074 - -
Alju12g1346 1350 Coils Coil 249 278 - -
Alju12g1346 1350 SUPERFAMILY PAH2 domain 330 397 IPR036600 GO:0006355
Alju12g1346 1350 Pfam C-terminal domain of Sin3a protein 1110 1348 IPR031693 -
Alju12g1346 1350 MobiDBLite consensus disorder prediction 832 847 - -
Alju12g1346 1350 FunFam Paired amphipathic helix protein SIN3 328 401 - -
Alju12g1346 1350 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Alju12g1346 1350 MobiDBLite consensus disorder prediction 905 963 - -
Alju12g1346 1350 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Alju12g1346 1350 Pfam Paired amphipathic helix repeat 352 396 IPR003822 GO:0006355
Alju12g1346 1350 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Alju12g1346 1350 Gene3D Paired amphipathic helix 328 401 IPR036600 GO:0006355
Alju12g1346 1350 MobiDBLite consensus disorder prediction 1018 1033 - -
Alju12g1346 1350 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Alju12g1346 1350 ProSiteProfiles PAH domain profile. 330 399 IPR003822 GO:0006355
Alju12g1346 1350 MobiDBLite consensus disorder prediction 916 933 - -
Alju12g1346 1350 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Alju12g1346 1350 MobiDBLite consensus disorder prediction 803 831 - -
Alju12g1346 1350 MobiDBLite consensus disorder prediction 217 306 - -
Alju12g1346 1350 MobiDBLite consensus disorder prediction 934 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1346 Alju-ChrAlju12 34639481 34648516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1346 33 120 WRKY Transcription Factor Family AT4G12020 61.364 1.16e-23 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju12g1346 Sin3a_C 3e-54 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g0946 09 30107777 30118367 Alju12g1346 12 34639481 34648516 CCT
Alju12g1346 12 34639481 34648516 Alju12g1346 12 34639481 34648516 ECH