Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1341 ATGCTTTCCTCATACAGACACATCCCAAAAAGATTTTCAACATTTCAACTGGTAGTCAAAAAAGCTGCATATTCCCTCTCTCCTCCTTTCTCTATCTGTCCCAATCTCCTTCAACTTCTCTGCTTTATTATGAGCTCCGAATCACTCTTTCACAACATAAACGTGAGCCCCATTTCGTTCATCATGAACTTTATCTTTCTCACTGCTTCGATCTTTCTCCTTTATTCATCATCGCTTTGTGTTTCCATCGACGACGACGTCGTTTGCCTCCAAGGTGTGAAGAGCTCATTTTCCGACCCAAATGGAAAACTCAGCTCCTGGAGCTTCACCAACACTTCTGTGTCCTCAATCTGCCAGCTCGTCGGAGTTTCTTGCTGGAACGAGAAGGAGACTCGCATCATCAGCCTCCAGCTCCGTGACATGCAGCTCGCCGGAAAACTCCCCGAGTCGCTCAAGTATTGCCGGAGCCTCCAGACCCTTGTACTCTCCGGTAATGCTCTCTCCGGTTCGATCCCTCCTTACATCTGTAGCTGGTTGCCTTATTTGGTGACCCTAGATCTCTCCGGTAACCAAATCTCGGGTTCAATCCCACCCGAGATTGTGAATTGCAGGTTCCTGAATACCCTTATTCTGAACGATAACAAATTATCGGGTTCGATCCCTTACGAACTGGGTCGGCTTGACCGATTGAAGAGGCTCTCTGTTGCCAATAACGATCTCTCGGGTTCTATTCCTCCGGATTTGTCCAAATTTGACGCGGCTGATTTTGATGGGAACGGTGGATTATGCGGGAAGCCTACTGGATCAAAGTGTGGTGGATTGAGTCGTAGAAGTCTTGGGATTATTATTGCTGCTGGTGCGATTGGAGCCTTGGGATCTTTAGTTGTGGGTTTCGCTCTCTGGTGGTGGTTCTTCCTGAGAGTCAGTGAGGAAAAGAAAGAGTATAGTTGTTCTGGTGGTGGAAAGCAAGTGGGTGACTGGATTGATTTGCTAAAGTCACACAAGCTAGCTCAAGTTTCTTTGTTCCAGAAACCCATAGTGAAGGTCAAATTAGCTGATTTGCTAATAGCCACTAATAGCTTTCATCCGGAAAATATTGTGATTTCTAGTAGAACAGGAGTGTCTTATAAGGCAGTTTTGAGTGATGGGTCAGCTCTTGCTGTGAAGAGGCTTAATTCTTGTAAACTTGGTGAGAAGCAATTTAGATCAGAGATGAACAGGTTGGGGCAGCTCAGACACCCCAATTTGGTACCTCTATTAGGTTTCTGTGTGGTGGAAGAAGAGAAGCTTTTGGTGTACAAGCACATGTTCAATGGAACCTTGTATTCTCAGTTGCATAAACACGGTCAAGCTAATAATAGTCAATATAGTTTTCTGGATTGGCCAACGAGGCTGAGAATTGGGACAGGTGCTGCTAGAGGACTTGCTTGGCTTCACCATGCTTGTCAACCTCCCTATATTCACCAGAACATCAGCTCAAATATAGTCCTTCTTGACTATGATTTCGAAGCTCGAATAACAGATTTCGGATTGGCAAGGCTCGTGGTTTATCGCGATCCCAATGATAGCTCCTTTGTGAATGGTGATCTGGGTGAATTTGGTTATGTTGCTCCTGAGTACTCAAGCACCATGGTTGCTTCCCTGAAAGGCGATGTTTATGGCTTTGGAGTTGTTCTCTTGGAATTGGTCACCGGGATGAAGCCGGTGGAAGTAAACACTGGAGGGGAAGGATTCAAAGGGAATTTAGTGGATTGGCTCAATTGGTTAACCGTGACAGGAAGAACTAAAGAAGCCATAGATAAAGCGTTGCTAAATGAAAACCCTGAGCATGGTGATGAATTTATGCAGTTCATGAAGGTTGCCTTATCTTGTGTTGTTTCTAGACCTAAAGATAGACCTTCCATGTACCAAGTTTTCTCCTCACTGAAGAGCATGGCTGAGAAACATGGTTTTGCAGATCAGTATGATGACTTCCCAGTTGTCTCTGGCAAAGAAGACTCTGACTACAATAAGAATTAG 2019 0.4492 MLSSYRHIPKRFSTFQLVVKKAAYSLSPPFSICPNLLQLLCFIMSSESLFHNINVSPISFIMNFIFLTASIFLLYSSSLCVSIDDDVVCLQGVKSSFSDPNGKLSSWSFTNTSVSSICQLVGVSCWNEKETRIISLQLRDMQLAGKLPESLKYCRSLQTLVLSGNALSGSIPPYICSWLPYLVTLDLSGNQISGSIPPEIVNCRFLNTLILNDNKLSGSIPYELGRLDRLKRLSVANNDLSGSIPPDLSKFDAADFDGNGGLCGKPTGSKCGGLSRRSLGIIIAAGAIGALGSLVVGFALWWWFFLRVSEEKKEYSCSGGGKQVGDWIDLLKSHKLAQVSLFQKPIVKVKLADLLIATNSFHPENIVISSRTGVSYKAVLSDGSALAVKRLNSCKLGEKQFRSEMNRLGQLRHPNLVPLLGFCVVEEEKLLVYKHMFNGTLYSQLHKHGQANNSQYSFLDWPTRLRIGTGAARGLAWLHHACQPPYIHQNISSNIVLLDYDFEARITDFGLARLVVYRDPNDSSFVNGDLGEFGYVAPEYSSTMVASLKGDVYGFGVVLLELVTGMKPVEVNTGGEGFKGNLVDWLNWLTVTGRTKEAIDKALLNENPEHGDEFMQFMKVALSCVVSRPKDRPSMYQVFSSLKSMAEKHGFADQYDDFPVVSGKEDSDYNKN 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1341 672 SUPERFAMILY L domain-like 81 258 - -
Alju12g1341 672 Pfam Leucine rich repeat N-terminal domain 84 126 IPR013210 -
Alju12g1341 672 Gene3D Phosphorylase Kinase; domain 1 322 435 - -
Alju12g1341 672 CDD STKc_IRAK 369 645 - -
Alju12g1341 672 Pfam Protein tyrosine and serine/threonine kinase 384 641 IPR001245 GO:0004672|GO:0006468
Alju12g1341 672 Gene3D Ribonuclease Inhibitor 84 273 IPR032675 -
Alju12g1341 672 ProSiteProfiles Protein kinase domain profile. 361 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju12g1341 672 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 83 272 - -
Alju12g1341 672 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 436 650 - -
Alju12g1341 672 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 105 639 - -
Alju12g1341 672 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 322 435 - -
Alju12g1341 672 SUPERFAMILY Protein kinase-like (PK-like) 339 642 IPR011009 -
Alju12g1341 672 Gene3D Transferase(Phosphotransferase) domain 1 436 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1341 Alju-ChrAlju12 34561999 34564017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1341 64 667 Receptor kinase-like Gene Family AT1G27190 66.391 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Alju12g1341 PK_Tyr_Ser-Thr 2.9e-30 CL0016