Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1333 ATGGATCCGGCGGCTATCAATATGATGAACGAGGGTTCGTTTGCGAATGGGAACGCCAATACGGCGTTGTATGACTTGGCGGAGATCTGGCAGTTCCCGATGAACGGCGGTGCGGGTCTCGGGGAGTCCGGAGGCGGGTTGGGCTTGAGGAGGCCACAGTTTGGACAAAATTTGGGGCAATTTGGCGATATTACGTCGAGTCCGAACCCGAATGCCCCGGGTAATAATCCGAACTGTTCGGAGCAGGGAGCGAATGTTGTTGATAAGAAGCGCGATTCCGAGGATGAATTGGTGAAAGGCGTCTCCACCACCATCAACGGTGGCATTGGCCGTAGCAATGGCGTGAATGATGGTGATGGAAAACGGCTTAAATTATCAGGGAATAGGAATGAGGGCAACGAATCTAAAGCTGAAACAGAAACCAGTTCAGAGAAGCCAGAGGAGCAAAGTACTGAGCCAGCTTCTGAGCCTCCTAAGCCAGCTTACATCCATGTACGGGCAAGAAGGGGTCAAGCAACTGATAGCCACAGTCTAGCGGAAAGAGCTAGGAGGGAAAAGATAAGTGAGAGGATGAAAATTCTTCAGGAGTTGGTTCCTGGTTGTGACAAGGTTATTGGGAAAGCGTTGGTCCTCGATGAGATAATAAATTACATTCAGTCACTACAGCATCAAGTTGAGTTCTTGTCAATGAAACTTGAAGCTGTAAATTCAAGAGCTAATCCTGGCATTGAAACTTTTCCTCCTAAAGATTTTGGTCAACAAATATTTGACATGGTAATTGGTTCTCAAGCTCCGCGAGATCAGTTTAGCCGGGGTTCATCACCGGAGTGGTTACACATGCAGGTAGGAGGAGGTGGATTTGAAAGAACAACATGA 876 0.4817 MDPAAINMMNEGSFANGNANTALYDLAEIWQFPMNGGAGLGESGGGLGLRRPQFGQNLGQFGDITSSPNPNAPGNNPNCSEQGANVVDKKRDSEDELVKGVSTTINGGIGRSNGVNDGDGKRLKLSGNRNEGNESKAETETSSEKPEEQSTEPASEPPKPAYIHVRARRGQATDSHSLAERARREKISERMKILQELVPGCDKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANPGIETFPPKDFGQQIFDMVIGSQAPRDQFSRGSSPEWLHMQVGGGGFERTT 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1333 291 SMART finulus 177 227 IPR011598 GO:0046983
Alju12g1333 291 MobiDBLite consensus disorder prediction 122 152 - -
Alju12g1333 291 CDD bHLH_AtBPE_like 162 246 - -
Alju12g1333 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 221 IPR011598 GO:0046983
Alju12g1333 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 238 IPR036638 GO:0046983
Alju12g1333 291 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983
Alju12g1333 291 Coils Coil 218 238 - -
Alju12g1333 291 MobiDBLite consensus disorder prediction 43 159 - -
Alju12g1333 291 FunFam Basic helix-loop-helix transcription factor 168 240 - -
Alju12g1333 291 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 259 IPR024097 GO:0006355
Alju12g1333 291 Gene3D - 168 241 IPR036638 GO:0046983
Alju12g1333 291 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1333 Alju-ChrAlju12 34492380 34494486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1333 1 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 50.175 9.69e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju12g1333 HLH 2.2e-08 No_clan