Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1288 ATGGCTGGTCCTAAGCTTTTTGCTCCCTCAAATCTCACAGATTTTCTTCAAAACGAAAGCCTTCCCTCTGCTCCTCCTCCTCCTCCTCATGTTCTTGACTCTTTCTTGTTTCACCACTCTGATCCCTCCTTTCAAGGTTCAAAACATCTGCTTGATTTCGAGAATGTTAGTGGAAGTACAATATCAGAATTGCCATTCTTCCAAGGTCTGGACAAAGAAGAGAACCACACAGAAGAGGAATACGATGCGTGCTTTCATCAAGCAGGGAAGAAGAGGAGGCTCACAGGCCAACAAGTTCAGCTCTTGGAGAAGAACTTCGAGGTAGAAAACAAGCTCGAACCAGACAGAAAAGTTCAACTGGCCAAAGAACTCGGATTGCAGCCAAGACAAGTCGCTATTTGGTTCCAGAACCGACGAGCCCGGTTCAAGACCAAACAGCTCGAAAAAGACCATACCGCCTTAAAATTTAGCTATGACAAACTCAAAGGTGAATATGACAATCTTCTTCACCAGAACAACAAGTTAAAAGAAGAGGTGGATTCTCTGAAAGACAGGTTGAAAGGGAGAGATCAAAAAGAGAAAGAAGAGAATTGTGTTGATGCTTTGATCTCAGATAATAATAATGGGGTTTCTGAAAATGGGGCAAAAGTTGAAAAGGTTCCTTCTACAGTGGTAATATGCAAACAAGAAGATGCTAATTCTGCTAAAAGTGATGTGTTTGATTCTGATAGCCCACACCACACTGCAGATTCGTCTCATGCCTACTACGAAGCAGAGCACTCAGATTTCTCACAGGATGAAGAAGACAACAACAACAACGACAACAACAACCTCGTGAGTCTCCCATGCTTATTACCCAAGGTTGAAGAAGAGCCCTGTAACTTTGGGTTCCCATCATATGAAGATCAACCCTTCTATTTTTGGCCTTATTAA 933 0.4255 MAGPKLFAPSNLTDFLQNESLPSAPPPPPHVLDSFLFHHSDPSFQGSKHLLDFENVSGSTISELPFFQGLDKEENHTEEEYDACFHQAGKKRRLTGQQVQLLEKNFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDHTALKFSYDKLKGEYDNLLHQNNKLKEEVDSLKDRLKGRDQKEKEENCVDALISDNNNGVSENGAKVEKVPSTVVICKQEDANSAKSDVFDSDSPHHTADSSHAYYEAEHSDFSQDEEDNNNNDNNNLVSLPCLLPKVEEEPCNFGFPSYEDQPFYFWPY 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1288 310 CDD homeodomain 90 146 IPR001356 GO:0003677
Alju12g1288 310 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Alju12g1288 310 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Alju12g1288 310 Gene3D - 84 153 - -
Alju12g1288 310 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Alju12g1288 310 SUPERFAMILY Homeodomain-like 80 147 IPR009057 -
Alju12g1288 310 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 74 245 IPR045224 GO:0003700
Alju12g1288 310 FunFam homeobox-leucine zipper protein ATHB-6-like 93 139 - -
Alju12g1288 310 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Alju12g1288 310 Coils Coil 158 192 - -
Alju12g1288 310 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Alju12g1288 310 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Alju12g1288 310 SMART HOX_1 88 149 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1288 Alju-ChrAlju12 33968866 33970063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1288 90 309 Homeobox Transcription Factor Family AT3G01470 40.807 1.49e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju12g1288 Homeodomain 7e-16 CL0123