Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1285 ATGGAATCACAGTTGGGATCAATCGACAGTCGTTACTCCTGCCATGTTCGCGAGGTGCTCGACGAATTGCCTGACAAATTTGTCATCACCGACCCCTCTATCTCTGGCCACCCGATTGTTTTTGCGAGCCACGAGTTCTTGAAAATGTCAGGGTATTCCAAAGAAGAGGTGATTGGCAAGAATGGCAAGATTTTTCAAGGACCAGGGACATGTAGAAGATCGGTAATAGAAATTCGTGAGGCGATAAGAGAAGAGAGACCTATTCAGATCAATTTGTTGAATTATCGTAAAGATGGAAAGCCTTTTTGGATTTTGTTTCACATGAACCCTGTATTTAACAAGTATGATGGTAGGGTGAGTCACTTTGTGGCAGTTCAGGTACCTCTATCAAGGAAACGGAGGCGGTCGGGATGCGGTGTTAGGAGAACTAACGTTAATTTGAGTGACGATGGGTCTATGGCTCAGGATTTTGTGTATGGATCGTGTCGAAAGGAAGTGTGCTCGGATTCTTTGTTGGAACTTGGTCGTGTTTTGTCTCTTCATCAAGTGTCAGAAGTAGAACATGATGGTAGAGAACCAAATAGTGAAGAACCGTGTGAAGCAAGTGATGTTGATAAGAGAAAAGCTATGACTGCCATGGACAACATTTTTTCTGTGCTAACCCACTATAGTGAGTTGACTGGCAGATTGGTATGTAGAAAGAGATGCAGCATTTCTGACGTGGGTCTTCTTGGCTCATCCTTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCATTTACCTGATATGCCTATTGTGTATGCCAGTGACGCCTTCTTGAAATTGACAGGTTACGTAAAAGATGAAGTGCTGGGACGCAACTGTAGATTTCTAAGTGGACTGAATACTGATACCTCAGCTTTATATTTGATAAGGGAGAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATGAAAGCCCATTTTGGAATTTTCTACACATATCACCTATTCGTGATGCCTCTGGCAAGATAGCATATATTGTGGGGGTTCAAATGGAAGAAGGCTGTGAGAACAAGCAAGGCAGACAGGGTCTGAGCCCTCATAAGATTCAGCTAAGCGTGGTGGGAGCAGTGAGGATTGCTGTGAGGAGTTCATCATTGACTGCAGGATCTTCCAAGTCATAA 1203 0.4289 MESQLGSIDSRYSCHVREVLDELPDKFVITDPSISGHPIVFASHEFLKMSGYSKEEVIGKNGKIFQGPGTCRRSVIEIREAIREERPIQINLLNYRKDGKPFWILFHMNPVFNKYDGRVSHFVAVQVPLSRKRRRSGCGVRRTNVNLSDDGSMAQDFVYGSCRKEVCSDSLLELGRVLSLHQVSEVEHDGREPNSEEPCEASDVDKRKAMTAMDNIFSVLTHYSELTGRLVCRKRCSISDVGLLGSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYVKDEVLGRNCRFLSGLNTDTSALYLIRESIKAEQPCTVRILNYRKDESPFWNFLHISPIRDASGKIAYIVGVQMEEGCENKQGRQGLSPHKIQLSVVGAVRIAVRSSSLTAGSSKS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1285 400 SUPERFAMILY PYP-like sensor domain (PAS domain) 261 357 IPR035965 -
Alju12g1285 400 CDD PAS 39 126 IPR000014 -
Alju12g1285 400 SUPERFAMILY PYP-like sensor domain (PAS domain) 24 126 IPR035965 -
Alju12g1285 400 FunFam protein TWIN LOV 1 258 395 - -
Alju12g1285 400 Gene3D PAS domain 258 396 - -
Alju12g1285 400 Gene3D PAS domain 26 155 - -
Alju12g1285 400 ProSiteProfiles PAS repeat profile. 12 61 IPR000014 -
Alju12g1285 400 SMART pac_2 89 132 IPR001610 -
Alju12g1285 400 SMART pac_2 321 360 IPR001610 -
Alju12g1285 400 ProSiteProfiles PAS repeat profile. 271 293 IPR000014 -
Alju12g1285 400 Pfam PAS domain 258 356 IPR000014 -
Alju12g1285 400 Pfam PAS domain 36 127 IPR000014 -
Alju12g1285 400 FunFam Protein TWIN LOV 1 isoform D 26 222 - -
Alju12g1285 400 PANTHER PROTEIN TWIN LOV 1 6 390 - -
Alju12g1285 400 NCBIfam PAS domain S-box protein 271 356 IPR000014 -
Alju12g1285 400 NCBIfam PAS domain S-box protein 17 124 IPR000014 -
Alju12g1285 400 CDD PAS 267 359 IPR000014 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1285 248 372 AGC Kinase Gene Family AT5G58140 41.985 5.00e-27 111