Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1273 ATGAAAAAAATAGACAGAAGTATTACCTTATTTTCATTCTTTTTATTAATATGTTGGGTAGCTATTCCTACCCTCCATGCAAATGTGTTAGAGAATGAAACTTTTTGGAACGAGCATTCCAGTGAATTTGATCAGTATTGGCATCAAAGAGCCAAGGAAGCTGAAGAGGCCAACAAGGAAGAATATCAATATAACCCCTATGAAGTCGTAGGCAACATCACCGCTAGTGTTGATAGAATGCTGCTTAGCACAGGGCGGGAAGGAAGGAGCTTGCGACAACGTGCTCCTTACACTGGTCCGTGCATAGCCACCAACCCAATTGATAGGTGCTGGAGATGCGATCCCAACTGGGAGCAAAACCGACAGAAGTTGGCTGATTGTGTTCTAGGATTTGGCAAAGGTACAACTGGTGGAAAGGGTGGTGCATACTATGTGGTAACAGATCCATCAGATGATGACATGCTTAACCCCAAAAATGGTACCCTTAGGCATGCAGTTACAAGGACCGGTCCCTTGTGGATTATCTTTGCACGCAGCATGGTGATTAGGCTGCAGCAGGAGCTAATTATGACTGGGGATAAGACCATTGATGGCAGAGGAGCCACTGTTGTAATCACAGGAGGGGCTGGCATTACCCTCCAGTTTATCAAGAATGTGATCATTCACAACATTAAGGTCTTCAACATTAAGTCTACCAGTGGTGGAATGATTAGAGATAGTGAAGAACATTATGGTTTGAGGACAAGAAGTGATGGTGACGGGATTTCAATCTTTGGCTCTAGCAAAATCTGGATTGATCATGTTTCCATGAGCAATTGTGACGATGGGCTCATCGATGCCATCATGGGATCCACTGCCATCACCATCTCCAATAACCATTTCACAAAGCACAATGAGGTGATGTTGTTTGGTGCTAGTGACAGCTATGCAGGAGACCAGATTATGCAAATCACCGTGGCATTCAATCACTTTGGACAGGGATTAATCCAAAGGATGCCAAGGAGCAGATGGGGTTTCGTTCATGTGGTTAACAATGACTACACTCACTGGGAAATGTACGCCATTGGCGGCAGCCAGCATCCTACCGTCATTAGTGAGGGTAACAGATTCATAGCCCCGAATAACATTTTTGCCAAAGAGATTACTAAGAGAGAGTACTCACCAGAAAGCGTGTGGAAGAACTGGCAATGGAGATCAGTCAATGACCTACTCATGAATGGAGCTACATTCACGGAATCTGGGACTGGTCTTCCAGTGTCGACGCGTGACAAGCTCAAGGGCAAGCCTGGATCATATGTGTCAAGACTCACACGCTTCTCCGGAATAATCAGGTGCCATGTGGGTGACAAGCAATCAAGCATGCATACAACAAAAAACCCCTTTTTGGATGAAGAATTCAAGGTATTATTCAAACAATTTCCTGGTCGACATCCTATGTTGGGACTGTTGGAGCATTTAGATTCTCTATTGAGCCTAAACTTTACATACTTTAGAAGCAGTAAGTGGGAAATGGAGGTAGCTTCTTTGAAATGTGAACTGAGCCAAACAAGCCGTAGGTCTTACAATGTGGATGGTGGTGAGAGTGATGCTGGTAAGTGTGGCAAAAGGAGGCGTAGAGCTTCTTCTTTGGCTATCTTAGAAGCCAATGAACAGTCGCAAGAACAGCAGCCACAGGCTGACCGATCAACCACCACCACCGTGAAGAGAAGCTCGAGGTTTCGGGGAGTTAGCAGACATAGGTGGACAGGAAGGTTTGAGGCTCACCTATGGGATAAAGGAACATGGAATCCAACTCAGAAAAAGAAGGGGAAGCAAGGGGCTTATACTGATGAAGAAGCAGCTGCTAGAGCTTATGACTTAGCTGCACTAAAGTACTGGGGAACTTCAACTTTCACAAATTTCTCTGTGTCTGAGTATGAGAAAGAGATTGAGATCATGAAAACTGTAACCAAAGAAGAATACCTTGCTTCATTAAGAAGGAGAAGCAGTGGTTTTTCTAGAGGTGTGTCAAAGTACAGAGGAGTAGCAAGGCACCATCACAATGGCAGATGGGAAGCAAGGATTGGGAGAGTATTTGGCAACAAGTACCTCTACCTTGGGACTTACGGTACACAAGAAGAGGCTGCTCGCGCATACGACATAGCAGCAATTGAGTACAGAGGCATAAATGCAGTGACAAATTTTGACTTGAGCACATACATCAGATGGCTAAGGCCTGGAGCATCATCTTCTTCTTCTTTACTAGTGGGAAAACCAAGCACAGATCCTCAGAACATGGCAGCCTCAAATCTTGTCTCAACAGAAGGAACAACTGAGGTATCCAACTTCATCCTCCATCATCCATTCCCAGCTGGTGATTCTGACAGTACAAATAAGCAAGGCAGTTCACAATACATGAGCTCTCTAAGTGCCTTCAATAGCAAGTCATCTTCCCCAACAGCACTAGGGATTCTCCTGAAATCCTCAGTATTTAGAGAGCTGATGCAGAAGAATCTGAATTCTGCTAATGAAGAAGCAGAAGAAAGTGAATTGAAGATCCCTCAACAAGAAGGCAGTGATGGGGTTGGAGTCGCTTTTGATCATGAAGTTGCAAGTAACTCTTTCTTGTGCCCTTCCAATAGTAGCAGATTTCGCAAGGAGTCACTAGAAGAAAGCACATGGCCAATGTATCATAGAACCAGGCAATCCCTGTGGAGTGGTACTTTAAACTGA 2712 0.4454 MKKIDRSITLFSFFLLICWVAIPTLHANVLENETFWNEHSSEFDQYWHQRAKEAEEANKEEYQYNPYEVVGNITASVDRMLLSTGREGRSLRQRAPYTGPCIATNPIDRCWRCDPNWEQNRQKLADCVLGFGKGTTGGKGGAYYVVTDPSDDDMLNPKNGTLRHAVTRTGPLWIIFARSMVIRLQQELIMTGDKTIDGRGATVVITGGAGITLQFIKNVIIHNIKVFNIKSTSGGMIRDSEEHYGLRTRSDGDGISIFGSSKIWIDHVSMSNCDDGLIDAIMGSTAITISNNHFTKHNEVMLFGASDSYAGDQIMQITVAFNHFGQGLIQRMPRSRWGFVHVVNNDYTHWEMYAIGGSQHPTVISEGNRFIAPNNIFAKEITKREYSPESVWKNWQWRSVNDLLMNGATFTESGTGLPVSTRDKLKGKPGSYVSRLTRFSGIIRCHVGDKQSSMHTTKNPFLDEEFKVLFKQFPGRHPMLGLLEHLDSLLSLNFTYFRSSKWEMEVASLKCELSQTSRRSYNVDGGESDAGKCGKRRRRASSLAILEANEQSQEQQPQADRSTTTTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQGAYTDEEAAARAYDLAALKYWGTSTFTNFSVSEYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGASSSSSLLVGKPSTDPQNMAASNLVSTEGTTEVSNFILHHPFPAGDSDSTNKQGSSQYMSSLSAFNSKSSSPTALGILLKSSVFRELMQKNLNSANEEAEESELKIPQQEGSDGVGVAFDHEVASNSFLCPSNSSRFRKESLEESTWPMYHRTRQSLWSGTLN 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1273 903 Coils Coil 825 845 - -
Alju12g1273 903 FunFam AP2-like ethylene-responsive transcription factor 670 731 - -
Alju12g1273 903 Gene3D AP2/ERF domain 670 731 IPR036955 GO:0003700|GO:0006355
Alju12g1273 903 Gene3D AP2/ERF domain 571 637 IPR036955 GO:0003700|GO:0006355
Alju12g1273 903 MobiDBLite consensus disorder prediction 548 569 - -
Alju12g1273 903 CDD AP2 670 731 IPR001471 GO:0003700|GO:0006355
Alju12g1273 903 ProSiteProfiles AP2/ERF domain profile. 572 635 IPR001471 GO:0003700|GO:0006355
Alju12g1273 903 SUPERFAMILY Pectin lyase-like 105 422 IPR011050 -
Alju12g1273 903 PANTHER PECTATE LYASE 18-RELATED 56 448 IPR045032 GO:0030570
Alju12g1273 903 Pfam Pectate lyase, N terminus 41 84 IPR007524 GO:0030570
Alju12g1273 903 Pfam Pectate lyase 193 370 IPR002022 -
Alju12g1273 903 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Alju12g1273 903 PRINTS Pollen allergen Amb family signature 127 144 IPR018082 -
Alju12g1273 903 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Alju12g1273 903 PRINTS Pollen allergen Amb family signature 187 203 IPR018082 -
Alju12g1273 903 PRINTS Pollen allergen Amb family signature 251 272 IPR018082 -
Alju12g1273 903 PRINTS Pollen allergen Amb family signature 353 372 IPR018082 -
Alju12g1273 903 PRINTS Pollen allergen Amb family signature 151 176 IPR018082 -
Alju12g1273 903 Gene3D - 104 444 IPR012334 -
Alju12g1273 903 SUPERFAMILY DNA-binding domain 670 731 IPR016177 GO:0003677
Alju12g1273 903 Pfam AP2 domain 670 721 IPR001471 GO:0003700|GO:0006355
Alju12g1273 903 Pfam AP2 domain 571 627 IPR001471 GO:0003700|GO:0006355
Alju12g1273 903 SMART rav1_2 572 641 IPR001471 GO:0003700|GO:0006355
Alju12g1273 903 SMART rav1_2 671 735 IPR001471 GO:0003700|GO:0006355
Alju12g1273 903 SMART amb_all 179 376 IPR002022 -
Alju12g1273 903 SUPERFAMILY DNA-binding domain 571 637 IPR016177 GO:0003677
Alju12g1273 903 ProSiteProfiles AP2/ERF domain profile. 671 729 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1273 Alju-ChrAlju12 33810866 33819462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1273 10 449 Polysaccharide Lyase AT1G14420 56.018 3.89e-175 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Alju12g1273 Pectate_lyase_4 9.5e-19 CL0268