Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1271 ATGATGACCCAAACTACTTTTGTGACCTGGCAGCTTACGTGGCGTTTGACCGGTGTTGACTGGACGTCTAATGATGACGTGTCTCCCAACGTGGGCATGACCTCGCCATCATATCTTCCCGGCGTCATATTGCTCCCTGTGGTTCTTCTTCTTCAGGTCCCTCTCGGCGTGGCTCCCACTGTGGTTCATCTTCTTCATCAGCTCTCGGCATCGCTGCCTCTGATTGTTCTCAGTCACCACTCACCAACATCAAATATTCTTTTCCTCATGATTTCCGTTGAAATTTACTCCTCCCGAGCTTCATTTCACGTCCTGAGGTTCTCTACATGGAGGCGAACGAACACGCGGTTCTTAATTTTTCTCCCTTCCAAAACCAAGATGAGCTTCTTCCCATGCATCGCTCGTAGCGATGAATCCTTTCCGTTGCGTGCCCCAAAACAGTTGGGTTATGGTCCTCCGGAGGAATTGTTCGGTCTCGATGTGGAACTTAAGCCGAGCAATGGCAGCTCTCAAACATCGGACCCCAGGTCGTGGTTTGGTCCAAATGGACAGTACATCAGAGAGTTACCTTGTCCAAGCTGCCGGGGAAGGGGTTATACTCCTTGTACAGAGTGCGGAATTGAAAGATCAAGATCAGACTGTCCAAAGTGTAGTGGGAAGGGTATTGTTACTTGCCACCAGTGTTCAGGAGCTTGTGTTACTTGGGAAGAATCAATTGATGAAAGACCATGGGAAAGAGCACGTTCCATTTCCCCACTCAAAGTGAAGGAAGATGATGAAGTTGATAATTTAGACATAGAGCTGGATGTGAAGAAAAAATCGAAGCGCATTTATCAGTCACCACCTCCTGAAGTTGGATTAAAGATTAGTCGCTCATTGAAAGATCTTAATGCAAAAACCGGTCTGTTTAGCAAGAGAATGAAGATTATCCATCGTGATCCCATGCTTCATGCGCAGAGAGTGGCTGCAATTAAGAAATCCAAGGGAACTGATGCAGCTAGAAAGCAAACCTCTGAAACTATGAAAGCTTTCTTTAGTAACCCAGAAAATCGCCATAGAAGGAGCATTGCCATGAAAGGAGTGAATTTCTTCTGCCAAAACTGTGGACGGGAAGGGCATAGGAGACATTACTGTCCAGAACTGAAGGATAGTTTGGTGGATCGGCAATTCGCGTGCCGGCTATGTGGGGAAAAAGGCCATAACAGAAGAACATGCAGCAAGTTTAGGGTAGGCCACCGAAACGGCAGACCTGTAAAGCTTTATCGCTGTAAAGTATGTCGTCAATATGGCCATAATCGCAGGACCTGCCCTCGATTAGTTGTAACCTCCAAAACGACAGCTTTGCCAAGACCATACAAGTGTCGTTTGTGCCAAAAGAATGGGCACAATGTCAGGACATGTCCTAATGCAAGAGCTATTAGCATTACTCGACTTGCTCAAGATTAA 1446 0.4654 MMTQTTFVTWQLTWRLTGVDWTSNDDVSPNVGMTSPSYLPGVILLPVVLLLQVPLGVAPTVVHLLHQLSASLPLIVLSHHSPTSNILFLMISVEIYSSRASFHVLRFSTWRRTNTRFLIFLPSKTKMSFFPCIARSDESFPLRAPKQLGYGPPEELFGLDVELKPSNGSSQTSDPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCSGKGIVTCHQCSGACVTWEESIDERPWERARSISPLKVKEDDEVDNLDIELDVKKKSKRIYQSPPPEVGLKISRSLKDLNAKTGLFSKRMKIIHRDPMLHAQRVAAIKKSKGTDAARKQTSETMKAFFSNPENRHRRSIAMKGVNFFCQNCGREGHRRHYCPELKDSLVDRQFACRLCGEKGHNRRTCSKFRVGHRNGRPVKLYRCKVCRQYGHNRRTCPRLVVTSKTTALPRPYKCRLCQKNGHNVRTCPNARAISITRLAQD 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1271 481 Gene3D - 357 408 - -
Alju12g1271 481 ProSiteProfiles Zinc finger CCHC-type profile. 365 380 IPR001878 GO:0003676|GO:0008270
Alju12g1271 481 SUPERFAMILY Retrovirus zinc finger-like domains 414 471 IPR036875 GO:0003676|GO:0008270
Alju12g1271 481 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 154 406 - -
Alju12g1271 481 Gene3D - 419 475 - -
Alju12g1271 481 ProSiteProfiles Zinc finger CCHC-type profile. 392 407 IPR001878 GO:0003676|GO:0008270
Alju12g1271 481 SMART c2hcfinal6 364 380 IPR001878 GO:0003676|GO:0008270
Alju12g1271 481 SMART c2hcfinal6 453 469 IPR001878 GO:0003676|GO:0008270
Alju12g1271 481 SMART c2hcfinal6 422 438 IPR001878 GO:0003676|GO:0008270
Alju12g1271 481 SMART c2hcfinal6 391 407 IPR001878 GO:0003676|GO:0008270
Alju12g1271 481 Pfam Zinc knuckle 449 469 IPR025829 -
Alju12g1271 481 SUPERFAMILY Retrovirus zinc finger-like domains 362 408 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1271 100 469 C2H2 Transcription Factor Family AT5G20220 58.673 1.31e-155 446