Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1270 ATGGCACACGAAGAAATTAAACAGAACCTTAGCCGCGAAAGCCCAGGGGGAGAAGAAAGGACTAGCAGCAATAATCCAAAGATGTCGCAGCTTCACTGTCTATCTTCTTCTTCCTCACTCACCGCACAGTATTCCATTCAACTCTGCCCTCCCCACAGTTTCTATCCAAAGAAGTCCCTTTCTTTTCGCCCTTCTTCAACGTCCAGCGGCTCCAACTTCTCCCTCGCCCTCCCATCCTCTCGCACAAACCCATTTTCTATCAAATGCCGCCAATCCGAGTACTTCGAACAACAAAGCTTCAACAGACCCATAAGAAATGCAAACGGAAGCGATGCAGTTGGAGCTCTGCCGCCTAGGGTTTATGTGGGTCACTCGGTTTACAAAGGGAAGGCTGCTCTTACGGTGACTCCCAGGCCTCCAGAGTTTGCGTCATTGGAGTCTGGAGCATTCAAAGTATCTCGGGAAGGTTATGTGCTGCTTCAGTTCGCTCCTGCAGTTGGTATGCGCCAGTATGACTGGAACAGAAAGCAGGTATTCTCTCTATCAGTGAGTGAAATGGGAAATCTAATTAGCCTTGGTATGAGGGATTCGTGTGAATTTTTTCATGATCCTTTTAAGGGGAAGAGTGATGAAGGTAAAATCAGAAAAATTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGTCACTTTTTTAACCTAAGTGTTCAAAACAAGATTGAGAACGTGGATGAAAGCATCTATATCCCTATTACAAAAGCAGAGCTATCAGTTTTCCACTCAATTTTCAATTATATCATGCCATACCTTCTGGGTTGGCATGCGTTTGCAAATTCTATAAAACCGGATGATCAAAGCCGATTGAATAGTGCCAATCCAAGATATGGAGGAGACTATGAATGGAGCAGATAG 909 0.451 MAHEEIKQNLSRESPGGEERTSSNNPKMSQLHCLSSSSSLTAQYSIQLCPPHSFYPKKSLSFRPSSTSSGSNFSLALPSSRTNPFSIKCRQSEYFEQQSFNRPIRNANGSDAVGALPPRVYVGHSVYKGKAALTVTPRPPEFASLESGAFKVSREGYVLLQFAPAVGMRQYDWNRKQVFSLSVSEMGNLISLGMRDSCEFFHDPFKGKSDEGKIRKILKVEPLPDGSGHFFNLSVQNKIENVDESIYIPITKAELSVFHSIFNYIMPYLLGWHAFANSIKPDDQSRLNSANPRYGGDYEWSR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1270 302 Pfam Whirly transcription factor 126 260 IPR013742 GO:0003697|GO:0006355|GO:0006952
Alju12g1270 302 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 111 286 - -
Alju12g1270 302 SUPERFAMILY ssDNA-binding transcriptional regulator domain 118 302 IPR009044 GO:0003677|GO:0006355
Alju12g1270 302 MobiDBLite consensus disorder prediction 1 32 - -
Alju12g1270 302 MobiDBLite consensus disorder prediction 15 32 - -
Alju12g1270 302 Gene3D Transcriptional Coactivator Pc4; Chain A 113 290 IPR009044 GO:0003677|GO:0006355
Alju12g1270 302 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 79 302 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1270 Alju-ChrAlju12 33788931 33792246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1270 73 302 Whirly Transcription Factor Family AT1G14410 67.826 3.26e-118 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Alju12g1270 Whirly 6e-61 CL0609