Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1261 ATGGGAGTTTGTTTAAGCACGAATTCTCTGAATCCCAATCACAAACCCAACCAACCCTACAATAATATAGTTCATTCTCCTAATGGAAGACATGCCCACGTGGGAAGACCATGGATTCTCAATGAACAGAAGAATCTGTTTGTTGTTTCAGACAATCACAGAGGAAAGAGGAAGAGAGACGAAAAGAAGAAATATATAGCTGACCCGAGGGATTTGCAGGCTCTGACAGTAGACAAGTTAAGATCTCAAATTCGCAATAAGCTCAAAAAGTTCTCCTGTAAAGACATGGAAGATGCCACACGCAGGTTCAGAACTAAGAACTTGATTGGTCGAGGAGGTTTTGCTGATGTTTATAAGGGATATCTGTCACACTACATCATGAATGCTTCAAAACCAAATGAAGGATTCCCCATTGCTGTTAAGAGAATAAGAAGGCTTGGATCAGGAGGACACGAAGAATGGCTGAATGAAATAATATATTTGACCAAAATTAGCCATCCGAACGTGGTGAATCTAATAGGGTATTGCCGTGAGCGTCATCATAGAATGCTTGTGATTGAGTTCATGGTTGAAGGAAGCTTGGAGGACCATCTCTTGAAAGAAGACAGTAGAGAGCTAAACTGGAATAGAAGAATTAACATAGCGCTTGGGGCTGCAAGGGCTTTAGGCTTTCTTCACAGCTATGAAACACCAGTAATTCATCGTGATGTTAAATCTTCCAACATCCTGCTAGATGCTAACTTCAATGCAAAGCTCTCTGACTTCGGACTGGCTAGAGATGGACCTGAAGAAGATGACCAGTCCCATGTTTCCTCAAGAATCCTTGGCACTAGAGGCTATTTTGCCCCTGAGTACATAGCCACAGGCTCTGTTGTAGTTAGGAAACATTCAAATGGGGTGGTGGGGAATCTTGCCCAGTGGGCTGAACCATTTCTAAGTAACAAAATTGAACTTCACCGTGTTATAGACAAGAGACTAGGACAAAATTTTCCTAAGGAAGGAGCCTATGAGTTGGCTAAACTAATCCTAAATTGCCTCTGCTTAGACCCCAAACATCGCCCAACAATGGCTGAGGTTGTTGCTGCCTTGGAACAGATAGAGCTTAACATGGGATTTCATTATAAGAGAATGTTAAACAGAAGAACCAGAACTCATTTTTGTTCTCACTCTTGA 1173 0.4186 MGVCLSTNSLNPNHKPNQPYNNIVHSPNGRHAHVGRPWILNEQKNLFVVSDNHRGKRKRDEKKKYIADPRDLQALTVDKLRSQIRNKLKKFSCKDMEDATRRFRTKNLIGRGGFADVYKGYLSHYIMNASKPNEGFPIAVKRIRRLGSGGHEEWLNEIIYLTKISHPNVVNLIGYCRERHHRMLVIEFMVEGSLEDHLLKEDSRELNWNRRINIALGAARALGFLHSYETPVIHRDVKSSNILLDANFNAKLSDFGLARDGPEEDDQSHVSSRILGTRGYFAPEYIATGSVVVRKHSNGVVGNLAQWAEPFLSNKIELHRVIDKRLGQNFPKEGAYELAKLILNCLCLDPKHRPTMAEVVAALEQIELNMGFHYKRMLNRRTRTHFCSHS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1261 390 PANTHER OS01G0588500 PROTEIN-RELATED 62 367 - -
Alju12g1261 390 Gene3D Phosphorylase Kinase; domain 1 82 188 - -
Alju12g1261 390 SUPERFAMILY Protein kinase-like (PK-like) 85 371 IPR011009 -
Alju12g1261 390 SMART serkin_6 103 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju12g1261 390 ProSitePatterns Protein kinases ATP-binding region signature. 109 141 IPR017441 GO:0005524
Alju12g1261 390 ProSiteProfiles Protein kinase domain profile. 103 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju12g1261 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Alju12g1261 390 Gene3D Transferase(Phosphotransferase) domain 1 189 378 - -
Alju12g1261 390 Pfam Protein tyrosine and serine/threonine kinase 105 363 IPR001245 GO:0004672|GO:0006468
Alju12g1261 390 FunFam Os07g0541700 protein 189 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1261 Alju-ChrAlju12 33612070 33614656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1261 89 363 Glycoside Hydrolase AT3G07070 41.806 2.43e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Alju12g1261 PK_Tyr_Ser-Thr 9.3e-40 CL0016