Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1253 ATGGCTCTCTTTCCAGCAAATTTCATATTACAGAACCCTCACCAAGAAGATCACCACCATCAACTTCCACCGTCTCTCAATTCAATTCTGCCTCAAGATTATCATGGAGGAGCTTCACTTTTAGGGAAGAGATCTATGACATTTTCAGGACTTGAACTTGGAGGTGGGGAAGAAGCAAACAATGGTTGTGAAGAAGACTTGTCTGATGATGGATCTCAGGCAGGGGAGAAGAAGAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAAAGCTTTGAATTTGGCAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCTCTTGGCTTGCAGCCAAGGCAGATTGCTATATGGTTTCAGAACAGAAGAGCAAGATGGAAGACAAAGCAGTTAGAGAAAGACTATGATCTTCTCAAAAGACAATATGAAGCTGTCAAAGCAGATAATGATGCCCTTCAAGCTCAAAACCAACAACTTCATGCTGAGATATTGGCACTGAAAAGCAGAGAAGTACCAACAGAATCTATAAACCTGAATAAGGAAACAGAGGGATCATGTAGCAATAGGAGTGAGAATAGTTCAGATATTAAGTTGGATATCTCAAGAACACCTGCTATAGACAGTCCTTTAACTACTCATCATCATCAAATTACAAGCAGACCCTTGTTTCCATCATCAACAACAACAAATTCTAATTCTGCTGCTGCTAGGCCTTCTTCAGGAGGAGGAGGATTGGCTCAGCTTTTTCAAACATCTTCTTCAAGACCAGACCTTCATCAGAAGAATAATATTGATCATATGGTCAAAGAAGAGAGCTTGAGCAACATGTTTTGTGGGATTGATGATCAAACAGGGTTCTGGCCTTGGTTGGAGCAGCAACATTTCAATTGA 900 0.4111 MALFPANFILQNPHQEDHHHQLPPSLNSILPQDYHGGASLLGKRSMTFSGLELGGGEEANNGCEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFEFGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADNDALQAQNQQLHAEILALKSREVPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLTTHHHQITSRPLFPSSTTTNSNSAAARPSSGGGGLAQLFQTSSSRPDLHQKNNIDHMVKEESLSNMFCGIDDQTGFWPWLEQQHFN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1253 299 MobiDBLite consensus disorder prediction 56 79 - -
Alju12g1253 299 MobiDBLite consensus disorder prediction 178 261 - -
Alju12g1253 299 Gene3D - 69 138 - -
Alju12g1253 299 Pfam Homeobox associated leucine zipper 132 172 IPR003106 GO:0006355|GO:0043565
Alju12g1253 299 FunFam Homeobox-leucine zipper protein ATHB-13 69 136 - -
Alju12g1253 299 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Alju12g1253 299 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Alju12g1253 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 215 IPR045224 GO:0003700
Alju12g1253 299 SUPERFAMILY Homeodomain-like 71 134 IPR009057 -
Alju12g1253 299 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Alju12g1253 299 SMART HOX_1 75 136 IPR001356 GO:0003677
Alju12g1253 299 MobiDBLite consensus disorder prediction 178 262 - -
Alju12g1253 299 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Alju12g1253 299 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Alju12g1253 299 Coils Coil 124 172 - -
Alju12g1253 299 CDD homeodomain 77 133 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1253 Alju-ChrAlju12 33502744 33504370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1253 1 299 Homeobox Transcription Factor Family AT1G69780 60.841 1.47e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju12g1253 Homeodomain 1.8e-15 CL0123