Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1252 ATGTCTAGCAGAAGATCTCGTTCCAGCACCAGAGAGATCAGTGATGCCCAGATCAACGATCTGGTCTCCAAGTTACAACGCCTTATTCCTCAGCTTCAACCCTCTCCCTCCCACCACAAGGTATCAGCAGCGAAGGTGTTGAAGGAGACTTGTGACTACATAAAGAAGTTGCACACAGAAGTTGATGATCTTAGTGATCGATTATCTGAGCTTTTGGCTAACACTGACTCCCACAGTGCCGAAGCTGCCATTCTTAGAGAAGTTGAGGCCCAATATGCTGGAATCGCTCTGGACCAGGAAGCCCAACCATTGATATGTTTCGGATTTCCACGTGGCACACATCCTACTGCGACATTGCAAAACCCCAATCCCGGCCAGCAGAGCGAAGTCAAAGTAGAGTCTCTCGCACCTTCTTCATGTACAGGCTTTCTGCGTTTTGAGGGAAATCTGCTTGAAAACATTGGCAAGATGGATTCCGATGGTTATGTTGTTGAAGTTACAAGTCTATCCCCAAAAGCCACAGAGAAAGATGTCTACGATTTTTTTGCTTTCTCTGGTGTAATTCAGCATGTTGAGATTGTGAGGTCTGGCAATGACGCTTGCACTGCTTATGTGACATTCAAGGATGCCTATTCTCAAGAAACTGCTTGCTTGCTCAGTGGTGCAACAATTTTAGATCACCGTGTGTGCATAACACACTGGGGGCAGAATAGAGATGAACATGACTTCTGGAGCAGTCCTTCCTATGGGGATGCTGATGAAACTACTTCAACTCAACCTCAAAGCAGTCATTTTGTGTCATCTGCTGGAGAAGCAGTTACTGTGGCACAAGATGTGGTCAAGACCATGCTAACAAAGGGATATGTTCTTGGTAAGGATGCGTTAGCCAATGCCAAGGCATTCGATGAGTCTCACCAAGTTTCAGCAACTGCCTCAGCGAAGGTTGCCGAGCTGAACCAGAGAATTGGCCTGACCGAGAAAATATCTGCTGGTGTCACCACTGTTAGGTCTGTCGATCAGAGATATCATGTCTCAGAAACAGCCATGTCAGCAGCATCAGCGACAGGAAGATCAGTTGCTGCAGCTGCAAATAGTGTGGTAAATAGCAGCTATTTTGCGAAGGGAGCCTTGTGGGTGTCTGGTGTTTTATCCCGAGCCGCAGATGCAGCGGCTGATCTGGGCAGCCGCGCTGATGGTGGTGGTAGGCAGTGA 1212 0.4777 MSSRRSRSSTREISDAQINDLVSKLQRLIPQLQPSPSHHKVSAAKVLKETCDYIKKLHTEVDDLSDRLSELLANTDSHSAEAAILREVEAQYAGIALDQEAQPLICFGFPRGTHPTATLQNPNPGQQSEVKVESLAPSSCTGFLRFEGNLLENIGKMDSDGYVVEVTSLSPKATEKDVYDFFAFSGVIQHVEIVRSGNDACTAYVTFKDAYSQETACLLSGATILDHRVCITHWGQNRDEHDFWSSPSYGDADETTSTQPQSSHFVSSAGEAVTVAQDVVKTMLTKGYVLGKDALANAKAFDESHQVSATASAKVAELNQRIGLTEKISAGVTTVRSVDQRYHVSETAMSAASATGRSVAAAANSVVNSSYFAKGALWVSGVLSRAADAAADLGSRADGGGRQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1252 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 2 57 IPR011598 GO:0046983
Alju12g1252 403 SUPERFAMILY RNA-binding domain, RBD 160 243 IPR035979 GO:0003676
Alju12g1252 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 228 IPR000504 GO:0003723
Alju12g1252 403 Gene3D - 125 242 IPR012677 -
Alju12g1252 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 237 IPR000504 GO:0003723
Alju12g1252 403 Gene3D - 15 88 IPR036638 GO:0046983
Alju12g1252 403 Pfam Helix-loop-helix DNA-binding domain 17 57 IPR011598 GO:0046983
Alju12g1252 403 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 155 395 - -
Alju12g1252 403 SMART rrm1_1 163 233 IPR000504 GO:0003723
Alju12g1252 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 77 IPR036638 GO:0046983
Alju12g1252 403 Coils Coil 54 74 - -
Alju12g1252 403 CDD bHLH_AtPRE_like 13 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1252 Alju-ChrAlju12 33483453 33490797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1252 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 59.494 1.65e-24 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju12g1252 RRM_1 7.5e-07 CL0221