Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1221 ATGGACCTGACCCCCACCACCACCGCCTCGCCGGCTGCCACCGCCACCGCCACCGCCCACTTTGATTCTCTCCATACTCCAACCCCACCGCCTACCCACCACCCCACAAACACCACCAAGTCACTGTCTTTCACCAATGGCTCCCTCAAGCGCCACCACCACCCTTCGCCTCATCTGCCGCCGCCGCCCGCCGTGGTTTCCTACAAGGAATGCCTCAAGAACCACGCCGCCAGCATCGGCGGCCACGCGCTTGATGGTTGCGGCGAGTTCATGCCTTCCTCCGCTTCCAACCCCAGTGACCCATGCTCCCTCAAATGCGCCGCGTGCGGCTGCCACCGCAACTTCCACCGCCGTGACTCCCAAGAGCCTCACTCCGCCAGCCCCAACTTCTTAAGCTGCTTCTACCCTCCGCTGCCTCCTCCGCCACCGCCGCTAGCTCCCCGGGGTTTGAGCCCCAGCACTAGCCCAAGCTCAAGCCCAAGCGGCACCAGTCCCAGCCCGTTGTCAAGCCCGTCGCCGCCACCGCTCTCGCATTTCCCTCCTTCTTCCTACCACATATCGGCACCGCGCATGTTGATAGCACTCGGGAGCGCTTATTCCGGACCGTCCGATGAGCATCATCACCGGAGCTTCATGAATTCTTCGGCGATGAAGACGCCGACGACGACGGAGAATGAGAGCCCAGGTGGGAGAAAGAGGCACAGAACGAAATTCAGCCAAGAGCAGAAGGAGAAGATGTTTCAGTTCTCTGAGAAATTGGGTTGGCGAATGCAGAAAGGAGATGATAGAATGATCCAAGATTTCTGCAATGAGGTTGGTGTCTCCAGAGGAGTGTTCAAAGTTTGGATGCACAACAACAAGAACACTTTGAGGAAAAAATCAGAAATTGGGAACACCCAAACTGAGAAAATCATCAATGAAGGTGATGATGATAATCGAGGAGGAGGTGGTGGGTTTGATTGTGATATAAACGACGACGATAATCACAGGAATGAAGAGATCTTTCGTTTCATTCATCTTCCTCTAGCTTGCTGA 1035 0.5614 MDLTPTTTASPAATATATAHFDSLHTPTPPPTHHPTNTTKSLSFTNGSLKRHHHPSPHLPPPPAVVSYKECLKNHAASIGGHALDGCGEFMPSSASNPSDPCSLKCAACGCHRNFHRRDSQEPHSASPNFLSCFYPPLPPPPPPLAPRGLSPSTSPSSSPSGTSPSPLSSPSPPPLSHFPPSSYHISAPRMLIALGSAYSGPSDEHHHRSFMNSSAMKTPTTTENESPGGRKRHRTKFSQEQKEKMFQFSEKLGWRMQKGDDRMIQDFCNEVGVSRGVFKVWMHNNKNTLRKKSEIGNTQTEKIINEGDDDNRGGGGGFDCDINDDDNHRNEEIFRFIHLPLAC 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1221 344 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 290 - -
Alju12g1221 344 MobiDBLite consensus disorder prediction 35 50 - -
Alju12g1221 344 MobiDBLite consensus disorder prediction 166 180 - -
Alju12g1221 344 NCBIfam homeobox domain, ZF-HD class 231 288 IPR006455 -
Alju12g1221 344 MobiDBLite consensus disorder prediction 21 62 - -
Alju12g1221 344 Gene3D - 216 293 - -
Alju12g1221 344 MobiDBLite consensus disorder prediction 227 242 - -
Alju12g1221 344 MobiDBLite consensus disorder prediction 141 182 - -
Alju12g1221 344 FunFam Zinc-finger homeodomain protein 2 218 292 - -
Alju12g1221 344 SUPERFAMILY Homeodomain-like 219 292 IPR009057 -
Alju12g1221 344 MobiDBLite consensus disorder prediction 199 242 - -
Alju12g1221 344 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 119 IPR006456 -
Alju12g1221 344 Pfam ZF-HD protein dimerisation region 66 120 IPR006456 -
Alju12g1221 344 MobiDBLite consensus disorder prediction 151 165 - -
Alju12g1221 344 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 68 119 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1221 Alju-ChrAlju12 33141912 33143107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1221 66 290 ZF-HD Transcription Factor Family AT1G69600 49.123 2.16e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Alju12g1221 ZF-HD_dimer 4.2e-28 No_clan