Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1218 ATGGAGGAGAGGAAGTTCGTGTGCAAGTATTGCAACAAGAAGTACCCGTGTGGGAAGTCTCTGGGTGGACACATCAGAACTCATATGACTGATGAATTTAAGACCAATGTCGATGATAGTGTTGTCAAGTTCGATGGTGGAAGGAAGAGGAAGAGAGATTTTGGGTCTGATGATGAAGAAGAAACTGCTTCTGAAAACCCCATTTATGATCTCAAAGAGAATCCCAAGAAGACAACTAAGAAGAAGAAGAAGATCGTAATAATTCCCAAAGCTTCTTCTATACAAAAAGAAAGATTCTGCAAAGAATGTGGGAAAGGCTTTTTGTCTCTCAAAGCTCTCTGCGGCCACATGGCTTGTCACTCGGAGAAAGATAAAGGGACGATGAAGAACAAGTTTGAGAAAAATTCTGGGTTTGGCGTGAAGCAGAAAATGGTGATGATGATGGATAGCGAATCGGACACAGAGACATTATCTGCTCCGAATTATCCTAGGAGATCCAGAAGTATGAGGTTCAAGACAGTGAATACTGATACAAATGGTTCTTCCTCTGTGTCTGATGCGGAGCAAGAACAAGAAGAGGTCGCTAAGTGTTTGATGTTATTGTCCAAAGACACGAGAATCATTTTCAAAAATGGTAAAAGAAGTGTTATGTCTAATGGTGTTGAGATCGTGGAGGAGGAGAAGGAGGAGAAGGTGGTGCTGTATAAGAACATGAAGTTGAAGTCTGGTGAGATTGTTGATTCTGATAATTCAGATCCTGGGTTTTTCAGAAATGGTCCAAAAATGTTAAATTTGGATGTTCCAATTGATAAGCATCTCAGGAATAGGGAATTCAAAACATCAAAGGTGGAAGACGGGTCTGAATATAGGAACAAGGTGCTGATCAAGAACAGAGGAAGAACAAGAATCACTGAACCCAAAAAACTAAGTTTGGAGAATTTGGACTATGATACAACAGATGGATTCACAAGGGAAGAGTTCATCAATTGGAGAAAGAGACCAAGCTATAATTCTCTCAGCCAAAACAATCCAATTGGTGTTTCTTGTAAGAAGACACCAAATGGTTTTCACAGTGAGGGATCATGGAAGCAAGAGAGCTTAAACAGTGAAAAAGTTATCATCAATGGCTCTTATGATGATGATGATGATGATTCATCAGCATATGATGAGAGTGATGAAAGTAGCACAGACACTGATGCTTATCCTGCTCAGATATCTAACAGAGTGAATGGAAAGAAGATCAGAAAGTGCAAGAAGAAATTGGAGTCAAAGAAAAGCAGGGACCATAGATGCCCCATCTGCTACAAAATTTTTAAGTCAGGTCAAGCATTAGGAGGTCACAAAAGGTCTCATTTTGTTGGAGGTTCTGAAGAGAACACACTGGTGATTAAACAAGATTCTCCTGTTGTTCAATGCCTGATTGATCTCAATCTACCTGCTCCTGTTGATGATTAG 1455 0.4 MEERKFVCKYCNKKYPCGKSLGGHIRTHMTDEFKTNVDDSVVKFDGGRKRKRDFGSDDEEETASENPIYDLKENPKKTTKKKKKIVIIPKASSIQKERFCKECGKGFLSLKALCGHMACHSEKDKGTMKNKFEKNSGFGVKQKMVMMMDSESDTETLSAPNYPRRSRSMRFKTVNTDTNGSSSVSDAEQEQEEVAKCLMLLSKDTRIIFKNGKRSVMSNGVEIVEEEKEEKVVLYKNMKLKSGEIVDSDNSDPGFFRNGPKMLNLDVPIDKHLRNREFKTSKVEDGSEYRNKVLIKNRGRTRITEPKKLSLENLDYDTTDGFTREEFINWRKRPSYNSLSQNNPIGVSCKKTPNGFHSEGSWKQESLNSEKVIINGSYDDDDDDSSAYDESDESSTDTDAYPAQISNRVNGKKIRKCKKKLESKKSRDHRCPICYKIFKSGQALGGHKRSHFVGGSEENTLVIKQDSPVVQCLIDLNLPAPVDD 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1218 484 ProSitePatterns Zinc finger C2H2 type domain signature. 431 451 IPR013087 -
Alju12g1218 484 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Alju12g1218 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 429 451 IPR013087 -
Alju12g1218 484 SMART c2h2final6 6 28 IPR013087 -
Alju12g1218 484 SMART c2h2final6 98 120 IPR013087 -
Alju12g1218 484 SMART c2h2final6 429 451 IPR013087 -
Alju12g1218 484 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Alju12g1218 484 MobiDBLite consensus disorder prediction 375 400 - -
Alju12g1218 484 MobiDBLite consensus disorder prediction 377 396 - -
Alju12g1218 484 SUPERFAMILY beta-beta-alpha zinc fingers 4 120 IPR036236 -
Alju12g1218 484 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 483 - -
Alju12g1218 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Alju12g1218 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Alju12g1218 484 MobiDBLite consensus disorder prediction 47 75 - -
Alju12g1218 484 Pfam C2H2-type zinc finger 429 451 - -
Alju12g1218 484 Pfam C2H2-type zinc finger 100 122 - -
Alju12g1218 484 Pfam C2H2-type zinc finger 6 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1218 Alju-ChrAlju12 33099859 33101313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1218 1 484 C2H2 Transcription Factor Family AT1G26610 34.579 4.73e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju12g1218 zf-C2H2_6 1.2e-09 CL0361