Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1211 ATGAAGAAGTTGATTTGCTTGGTGTTGCTTTTCGTGATAGTGGCCATTGCTGGTGTTGAAGCTGATGGCTATGGAGTGTGTGCGAAGTTCAGTCCAGATAGGATGCTCACACATGTCCTTCGTCACTGTGCTAAACCTGCAAGAGACTTGACGGCTCCGGTGACTCCAAATTGCTGTGAGCCTCTCTCCAAAATCTCAGAGAAATGCTTCTATGCAATCATCCATTCTGACACTTGGAAGTATTCAGGCATCGACCCTCGCATCGCTTTCACCATTCCCAGACAAGCGCGCCTATCTTCCTCCCACTTTCAGACGCCGAACGAGATGAGGATCGAACTCCATCCTGGTCCTCGCACCTTCGTCGTCGTCTCTCATTCGTTCGTAAAACCCTCTCAAAACTCTAATTTCAATCGCACAATACCACCTTTCACTTCACTCAATGGATCTTCACTCTTCAGACCCATTCCCCAATTTTCCCATCAACCCAACGCCCCTCCTCTTGCACCTTCTCACTCCGACACCGGCCTCCTTTTCCGGCAAAAAGTTATCTACCTCGAGAAACTCAACATCAACTCCAGTAAAGCCCTCCGGCAAAATCCTAACATCCGATCGGTTCCAATTTCCGCTCTCAAATCTGTAGAAGACTGCCTCTCCTCAATGGGCGTCGAGCACTCTGCAATGGGTCGAATCCTCGATATGTATCCCCAGCTTCTCACACGCGATCCCTATTTTGATCTCTACCCTGTTTTCGATTTCTTATTGAATGAAGTCGCAATTCCGTTCCCTGATATTCGGAAAGCGATTATACGGTGCCCGAGGCTATTGGTTTGTAGCGTGGATGAGCAACTCAGACCGACATTGAGCTTCTTGAGGAATTTAGGGTTCGTGGGACCTAATTCCATCAATTTCCAGACCACGTTGCTGCTGGTGTCAAGTGTGGAGGGTACCCTTACGCCTAAAATTGAGTATTTGCAGAGTATGGGGTTCTCTTATGAGGAAGTGGTAAATATGGTTGTAAGGTCTCCTGGATTATTGACGCTTAGTATCAAAAACAATTTGATGCCGAAGTTTGAGTATTTTTTGGAGGAGATGAATGGGGACATAGCTCAATTGAAGAGATTTCCACAGTATTTTTCATTTAGTTTGGAGAAGAAGATTAAGCCAAGGCATAGACTATTACTCAAGCACGGCTTTACGCTTCCGTTGGCTGAGATGTTAAAGGTTAGTGACGGCGAGTTCGGCGTTAGGTTAATTGAAATGCGACTACAGTCACTTGAGGGAACGTAG 1287 0.4646 MKKLICLVLLFVIVAIAGVEADGYGVCAKFSPDRMLTHVLRHCAKPARDLTAPVTPNCCEPLSKISEKCFYAIIHSDTWKYSGIDPRIAFTIPRQARLSSSHFQTPNEMRIELHPGPRTFVVVSHSFVKPSQNSNFNRTIPPFTSLNGSSLFRPIPQFSHQPNAPPLAPSHSDTGLLFRQKVIYLEKLNINSSKALRQNPNIRSVPISALKSVEDCLSSMGVEHSAMGRILDMYPQLLTRDPYFDLYPVFDFLLNEVAIPFPDIRKAIIRCPRLLVCSVDEQLRPTLSFLRNLGFVGPNSINFQTTLLLVSSVEGTLTPKIEYLQSMGFSYEEVVNMVVRSPGLLTLSIKNNLMPKFEYFLEEMNGDIAQLKRFPQYFSFSLEKKIKPRHRLLLKHGFTLPLAEMLKVSDGEFGVRLIEMRLQSLEGT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1211 428 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Alju12g1211 428 SMART mt_12 368 399 IPR003690 GO:0003690|GO:0006355
Alju12g1211 428 SMART mt_12 335 367 IPR003690 GO:0003690|GO:0006355
Alju12g1211 428 SMART mt_12 193 223 IPR003690 GO:0003690|GO:0006355
Alju12g1211 428 SMART mt_12 299 330 IPR003690 GO:0003690|GO:0006355
Alju12g1211 428 SMART mt_12 228 260 IPR003690 GO:0003690|GO:0006355
Alju12g1211 428 PANTHER CGI-12 PROTEIN-RELATED 189 416 IPR003690 GO:0003690|GO:0006355
Alju12g1211 428 Pfam mTERF 263 413 IPR003690 GO:0003690|GO:0006355
Alju12g1211 428 Pfam mTERF 216 293 IPR003690 GO:0003690|GO:0006355
Alju12g1211 428 Gene3D Transcription termination factor 3, mitochondrial 177 426 IPR038538 -
Alju12g1211 428 Gene3D - 34 102 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1211 Alju-ChrAlju12 33054615 33058582 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1211 22 100 Acyl Lipid Metabolism Gene Families AT3G53980 39.506 2.93e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Alju12g1211 mTERF 9.1e-32 No_clan