Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1209 ATGTCGGAGCTTAAAGATCCGGCGATTAAGCTTTTTGGACGGACGATTTCTCTCCCCCTCAACCGCCATGCTCCGTCCTTCAATGATTCCTCTGATGATCACACTCCTCCTTCCTCTTCCTCTTCCCCCCGCGAACTCAGCTCTTCAACACACCATCACCACCCTCTGGAATTGTCAAGGAATGAACTCACCTCAGCACAAGATGATGATGCCTCCTATCAAAGCACAGAGGATTTAAAATCTCCCTCAGCATCTTCAGGAATTCTTGAGAATCCTAAAACTCCCTCAGCAGAAAGAGAGACTTCTCTACTCAAATCTACTAAACCTGGAGAACAAAGTGAGACAAGCAATTCAGAAGAAAAAACTCCGAAAAAACCTGACAAGATACTTGCATGCCCAAGATGCAATAGCATGGACACCAAATTCTGTTATTTTAACAATTACAACGTCAACCAGCCGCGTCATTTCTGTAAGAACTGTCAGAGATACTGGACCGCTGGAGGAACCATGAGAAATGTGCCTGTAGGTGCAGGTCGTCGCAAGAACAAAAACTCTTCAGCCTCACAGTATCGTCAAATAATGATTCCAAATACCCTTCAGATTGCCAAGGAAAACTCTGCCAATGGATTGCACAATGCTGTTCTAGGAAATAGAGCAGCTGTTTTGACCTTTGGATCAGATTCTCCTCTTTGTGATTCCATGGTTTCTGTGTTAAACCTTGCAGAGAAAACACAGAATGGTACTGTTCTAAACGAGTTTCATTTACCCGAGCAAAATAATTTTGTCTCTCATGGTAGAGAAGATAATGGGAATGATCATCACTCCATTGCAGCTTCTGGTACTTCAGACAGGAAAATCAACAATGCTTCACAAGAACCTGTAAATAACATCAATCATGGTTTCCCTCCTCAATTGCCATGCTTTCCAGGTTCCTCATGGCCTTATCAATGGAACTCAGCGCAGTGGAATTCTCCGGTCCCTCCTCCCGGATTCTGTCCTCAAGGCTATCCTGCATCGTTCTATCCCAATCCTATATATTGGGGCTGTACTTTACCACCTTCATGGAACATACCTTCCATATCTGCACAATCAGCCCCTAGCTCTGGCCCTAATTCACCTTCCCTAGGAAAACACTCGAGGGAAGGCAACATTATAAATAAAGTCAACTCGCCTCAAGAAAAGCCTAATATGGAGAGTGGCAGTTCAGAAAGTGGTGTCTTGATTCCCAAGACTCTACGAGTTGATGATCCCAATGAAGCTGCAAAGAGTTCAATATGGTCAGCATTAGGGATGAAGAATGGGAAGACGAGTTCTCTGAATGGAGGAGGCCTTTTCAAGGCATTTCCTGCAAAGAGGGATGACAAGAACCATGTGGTTGAACCATCACTGGTGTTGCAAGCCAACCCGGCAGCTTTATCGCGATCTCTTACTTTCCATGAGCAGATTTAA 1449 0.4444 MSELKDPAIKLFGRTISLPLNRHAPSFNDSSDDHTPPSSSSSPRELSSSTHHHHPLELSRNELTSAQDDDASYQSTEDLKSPSASSGILENPKTPSAERETSLLKSTKPGEQSETSNSEEKTPKKPDKILACPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSASQYRQIMIPNTLQIAKENSANGLHNAVLGNRAAVLTFGSDSPLCDSMVSVLNLAEKTQNGTVLNEFHLPEQNNFVSHGREDNGNDHHSIAASGTSDRKINNASQEPVNNINHGFPPQLPCFPGSSWPYQWNSAQWNSPVPPPGFCPQGYPASFYPNPIYWGCTLPPSWNIPSISAQSAPSSGPNSPSLGKHSREGNIINKVNSPQEKPNMESGSSESGVLIPKTLRVDDPNEAAKSSIWSALGMKNGKTSSLNGGGLFKAFPAKRDDKNHVVEPSLVLQANPAALSRSLTFHEQI 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1209 482 MobiDBLite consensus disorder prediction 114 128 - -
Alju12g1209 482 Pfam Dof domain, zinc finger 128 184 IPR003851 GO:0003677|GO:0006355
Alju12g1209 482 ProSiteProfiles Zinc finger Dof-type profile. 130 184 IPR003851 GO:0003677|GO:0006355
Alju12g1209 482 MobiDBLite consensus disorder prediction 21 46 - -
Alju12g1209 482 MobiDBLite consensus disorder prediction 386 406 - -
Alju12g1209 482 ProSitePatterns Zinc finger Dof-type signature. 132 168 IPR003851 GO:0003677|GO:0006355
Alju12g1209 482 MobiDBLite consensus disorder prediction 386 411 - -
Alju12g1209 482 MobiDBLite consensus disorder prediction 362 381 - -
Alju12g1209 482 MobiDBLite consensus disorder prediction 60 113 - -
Alju12g1209 482 PANTHER CYCLIC DOF FACTOR 2 1 481 IPR045174 GO:0003700|GO:0006355
Alju12g1209 482 MobiDBLite consensus disorder prediction 15 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1209 Alju-ChrAlju12 33024330 33027295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1209 4 480 C2C2-Dof Transcription Factor Family AT5G39660 39.341 3.63e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Alju12g1209 zf-Dof 5.8e-32 No_clan