Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1198 ATGGGCAGGGTGAAGCTGAAGATAAAGAGGCTGGAGAACACTAATGGTCGTCAGGCGACCTATGCTAAAAGGAGGAATGGAATTATAAAAAAAGCTTCGGAATTATCTATACTGTGCGATATAGATATTATACTTCTCATGTTCTCACCAACTGGGAAGCCAGCACTATGCAGAGGGAGGCGTAGTTATGTTTATTTGCGTTCAGTATCAGATACATTTTCTTTTTCTGAGTTTGGTGTTGATGAATATGATGATAGGAATTTTTTCACAAGGAAGTTGGAGAGTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGACCACGATGTAAATGTACAAGAATTTCTGGGTACAAGCCATTGGGCTGAACTTGATAAAATCAACAATGCGGAACAATTGGAACAGATGGAAAAATCTCTCAGGGAGTCAATTAATCACCTTCAATTGCGCAAGGAAAATATACAAAAGCAACAACTTGAATCATTGCAATGCAGCAACCAGTTCAATGAGATTCCCTTCAGGATGAGTGCTGATCAATATCTCCAAAATCTATCATGGATTGCCAACAATGACAGCCAACATATGGTTTTACCGGATGATTCAAACTTGTTTCTCCTCAAAAACTGGGTTGATTTACTGCTTGAACCATTATGGGAAGAAGATATTAGACTTGCTATGGCTAATTGTGTGGCTCTAGATGTCAGTGACTTAGACACAGAGTGCTCTGCAAGCTCCTCCTTTTTTGGGAGTTTTGCTAGTTATCTTGGCTCATGTCAAAAACCAGATCTTTCTAATCCTGGGCAAGAAAATGGTGTCCTTAGTGACATGACTAGTGCCCCTTCTCTGAGACTACAATTAGGCGGGCAGTTTCCGTTGCCATATAATTTCAATCTACAGAATGTCACCAGGTTCCAGCCAACGGCAGAGATCAACCCACATGAAAACCCCATAGATTATCATCCTAATCAAAGCTTTGAAGCTCCTAGACTTGCCTTCGACTCTAACAACCATGGATGGGCTTCTACATCAGAGTCTTGTGCTGTTACCGCCATGCTCCATGAGTATTTGTATGCCCAGGCAAGTTTCTTTCAAGTGAACTTTGGCTTCTCATGA 1113 0.4079 MGRVKLKIKRLENTNGRQATYAKRRNGIIKKASELSILCDIDIILLMFSPTGKPALCRGRRSYVYLRSVSDTFSFSEFGVDEYDDRNFFTRKLESLEALKKTFKKLDHDVNVQEFLGTSHWAELDKINNAEQLEQMEKSLRESINHLQLRKENIQKQQLESLQCSNQFNEIPFRMSADQYLQNLSWIANNDSQHMVLPDDSNLFLLKNWVDLLLEPLWEEDIRLAMANCVALDVSDLDTECSASSSFFGSFASYLGSCQKPDLSNPGQENGVLSDMTSAPSLRLQLGGQFPLPYNFNLQNVTRFQPTAEINPHENPIDYHPNQSFEAPRLAFDSNNHGWASTSESCAVTAMLHEYLYAQASFFQVNFGFS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1198 370 SUPERFAMILY SRF-like 1 58 IPR036879 GO:0003677|GO:0046983
Alju12g1198 370 CDD MADS 2 54 - -
Alju12g1198 370 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Alju12g1198 370 Coils Coil 130 157 - -
Alju12g1198 370 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju12g1198 370 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju12g1198 370 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju12g1198 370 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju12g1198 370 Gene3D - 14 166 IPR036879 GO:0003677|GO:0046983
Alju12g1198 370 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Alju12g1198 370 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1198 Alju-ChrAlju12 32885664 32889913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1198 1 359 Type I MADS-box Gene Family AT2G03060 35.597 1.18e-62 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju12g1198 SRF-TF 1.5e-18 No_clan