Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1197 ATGCACCCAATGCATGTGAAAAAAATGGCTCTCATTGGGTTGCTCTTGATGGGGTTTCTCTCCATGCTCTCCTCTGCTCATGGCTATGGTGGAGGGTGGGTTGATGCTCATGCCACCTTCTATGGAGGTGGTGATGCTTCAGGCACAATGGGTGGTGCTTGTGGGTATGGGAATCTATACAGCCAAGGCTATGGAACGAGCACGGCTGCTCTGAGCACGGCTCTGTTCAACAATGGACTGAGCTGTGGGTCATGCTATGAGATCAGGTGTGTAAATGACAGAAGGTGGTGCTTACCAGGTTCCATAGTGGTCACAGCTACAAATTTCTGCCCACCAAACAATGCCTTGCCTAATAATGCAGGAGGATGGTGTAACCCTCCTCTTCACCATTTTGATCTCTCTCAGCCTGTCTTCCTCCACATTGCTCAGTACAGAGCTGGCATAGTTCCTGTGGCTTACAGAAGGGTATCCTGCAGGAGAAGGGGAGGCATAAGGTTTACAATCAATGGCCACTCCTATTTCAACCTGGTCCTCATCACAAACGTCGGTGGTGCCGGTGATGCACAGAGTGTGGCCATCAAAGGTTCAAGAACCAGGTGGATGCAAATGTCAAGAAACTGGGGCCAGAACTGGCAAAGCAACAACTATCTCAATGGCCAAGCCCTCTCCTTCAAGGTCACCACCAGTGATGGCCGCTCTGTAGTGTCCTTCAATGTTGCCCCTCCTAACTGGTCCTTTGGCCAAACCTTCACTGGTGCCCAATTCCGCTAG 771 0.5084 MHPMHVKKMALIGLLLMGFLSMLSSAHGYGGGWVDAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCYEIRCVNDRRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFLHIAQYRAGIVPVAYRRVSCRRRGGIRFTINGHSYFNLVLITNVGGAGDAQSVAIKGSRTRWMQMSRNWGQNWQSNNYLNGQALSFKVTTSDGRSVVSFNVAPPNWSFGQTFTGAQFR 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1197 256 FunFam Expansin 23 159 - -
Alju12g1197 256 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Alju12g1197 256 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Alju12g1197 256 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Alju12g1197 256 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Alju12g1197 256 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Alju12g1197 256 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Alju12g1197 256 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Alju12g1197 256 SUPERFAMILY Barwin-like endoglucanases 19 181 IPR036908 -
Alju12g1197 256 SMART dpbb_1 68 153 IPR007112 -
Alju12g1197 256 Pfam Lytic transglycolase 68 153 IPR009009 -
Alju12g1197 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Alju12g1197 256 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Alju12g1197 256 Gene3D - 163 255 IPR036749 -
Alju12g1197 256 Gene3D - 20 159 IPR036908 -
Alju12g1197 256 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Alju12g1197 256 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Alju12g1197 256 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Alju12g1197 256 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Alju12g1197 256 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Alju12g1197 256 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Alju12g1197 256 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Alju12g1197 256 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Alju12g1197 256 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Alju12g1197 256 PANTHER EXPANSIN-A15 17 255 IPR002963 GO:0009664
Alju12g1197 256 CDD DPBB_EXPA_N 32 158 - -
Alju12g1197 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 163 IPR007112 -
Alju12g1197 256 FunFam Expansin 163 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1197 Alju-ChrAlju12 32880629 32882781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1197 4 256 Expansin Gene Family AT2G03090 81.028 1.15e-156 434