Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1188 ATGGTGAAGTCATCGTCGTGGTGCGAGGAACAAGTAGGGTTAAAGAAAGGACCATGGACTCCAGAAGAAGACCAGAAGCTCATGTCTTACATTCAACTACACGGCCATGGAATCTGGTCTTCCTTGCCTGCTAAAGCTGGACTCAGGAGATGTGGGAAGAGCTGTAGATTGAGATGGATTAATTATCTAAGACCTGACATCAAACTAGGCAACTTTAGCTTACACGAAGATCAAACCATTATTCAACTTCATGCTCTCCTTGGAAACAAATGGTCGGTTGTTTTGCTGTCTGAATGA 297 0.4377 MVKSSSWCEEQVGLKKGPWTPEEDQKLMSYIQLHGHGIWSSLPAKAGLRRCGKSCRLRWINYLRPDIKLGNFSLHEDQTIIQLHALLGNKWSVVLLSE 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1188 98 Gene3D - 15 68 - -
Alju12g1188 98 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 67 IPR017930 -
Alju12g1188 98 SMART sant 15 65 IPR001005 -
Alju12g1188 98 CDD SANT 18 63 IPR001005 -
Alju12g1188 98 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Alju12g1188 98 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 93 - -
Alju12g1188 98 SUPERFAMILY Homeodomain-like 17 93 IPR009057 -
Alju12g1188 98 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Alju12g1188 98 FunFam MYB-related transcription factor 15 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1188 Alju-ChrAlju12 32740481 32742257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1188 6 94 MYB Transcription Factor Family AT5G15310 75.281 2.97e-47 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Alju12g1188 Myb_DNA-binding 8.9e-15 CL0123