Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1187 ATGGTGAAGTCGATGCGGGGAGAGAAGGCAGTGTTAAAGAAAGGGCCATGGACTCGTGAGGAAGATGAGAAGCTCCTGGCTTACATTCAACAAAATGGCCATGGAAATTGGTGTTCCTTGCCTGCTAAAGCTGGACTTGAAAGATGTGGCAAGAGCTGCAGACTGAGATGGATTAACTACCTAAGGCCTGACATCAAACGAGGCAACTTCAGTTTGCAGGAAGACCAAACCATTATTCAACTTCATGCTCTCCTTGGAAGCAGGTATATATGTTAG 276 0.4601 MVKSMRGEKAVLKKGPWTREEDEKLLAYIQQNGHGNWCSLPAKAGLERCGKSCRLRWINYLRPDIKRGNFSLQEDQTIIQLHALLGSRYIC 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1187 91 Pfam Myb-like DNA-binding domain 17 77 - -
Alju12g1187 91 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 89 - -
Alju12g1187 91 Gene3D - 13 66 - -
Alju12g1187 91 SMART sant 13 63 IPR001005 -
Alju12g1187 91 CDD SANT 16 61 IPR001005 -
Alju12g1187 91 SUPERFAMILY Homeodomain-like 15 89 IPR009057 -
Alju12g1187 91 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Alju12g1187 91 FunFam MYB-related transcription factor 13 66 - -
Alju12g1187 91 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1187 Alju-ChrAlju12 32597743 32598177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1187 8 89 MYB Transcription Factor Family AT3G01140 78.049 1.87e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Alju12g1187 Myb_DNA-bind_6 1.3e-13 CL0123