Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1088 ATGCCCTGCTCGAGGCAATCCTTCTGCATCTCTTCTTCCTCTTCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTTGTTTTGCATCGTTCTCTTTCATTCCAGTTTTCTCTATGGTTTAGCATTCTCTGCAAATCATGAAGCATCTGTTCTCTTCTCTTGGCTTCACAGCTCTGCTTCACCACCACCTCCATCTTTCTCCAACTGGAATATCCTTGACGCCAACCCATGCAATTGGACCTTCTTAACATGTTCCCCTCAAGGTTTTGTCACTGAAATCAACATACAATCCATCCAACTAGAGCTTCCTTTGCCTTCCAATCTCTCTTCCTTCCTCCATCTTCAAAAGCTTGTCATTTCTGATGCCAATCTTACTGGAACCATCCCTATCAGCATTGGTGACTGCTCTGCCCTTAGTCTCATTGACCTTAACTCCAACAATCTTGTTGGGTCGATCCCTTCAAGTATAGGTAAGCTTCAAAACTTGGAGAGCTTATCTCTGAACACAAACCAACTTACTGGGAAAATCCCAGTTGAGCTAGGAAACTGCATTAACCTTAAAAGTCTCATCCTTTTTGATAACCAGCTAAGTGGTGTTATCCCATCTGAGATAGGAAAGTTGTCAAAACTCGAGATTCTTAGAGCAGGAGGAAACAAAGACTTAGTTGGGAAAATCCCAGAAGAGATTGGAGAATGCAGCAATTTGACTGACCTGGGGCTGGCTGATACTGGTTTATCAGGTTCATTGCCAGCTTCATTGGGAAAACTGAGCAAGCTTCAAACTTTGTCCATCTACACTGCAATGCTATCTGGTGAGATTCCAGCTGAGTTAGGTAACTGCTCTGAACTTGTTGATTTATTCCTGTATGAGAATAGTCTATCTGGGTCTATTCCACCTGAGCTGGGTAAGCTTCAAAAGCTGGAGCAATTGTTTTTATGGCAGAATAGTCTTGTGGGAGCTATCCCAGAAGAGATTGGAAACTGTACAAGCTTGAAAAGAATTGATCTTTCTTTGAATTCTCTATCTGGCACTATCCCTTTATCTTTTGGGGGTTTGTTAGAACTTGAGGAGTTTATGATAAGTGATAATAATGTGTCTGGGTCAATACCTCCAAGTCTTTCAAATGCCTCATTTCTGCAACAGCTTCAAGTTGACACAAATCAGCTCTCAGGTTTGATCCCCCCAGAGCTTGGGAGGTTAGCAAAGCTCACAGTTTTCTTTGCTTGGCAAAACCAACTTGAAGGAAGTATTCCTTCTAGTCTGGCAAATTGTAGTAACCTACAAGCACTAGATTTGTCTCACAATGAACTTACTGGTAGCATTCCTCCTGGCCTATTTCAACTTCAAAACCTTTCAAAATTGCTCTTGATTTCTAATGATATTTCTGGTTCAATCCCATCAGAAATAGGCCTTTGTAGTTCTCTTATAAGACTGAGACTTGGGAAGAATAGGATTGCAGGTGGGATCCCTAAGTCAATAGGAAGCCTAAAAAATCTGAACTTTTTAGACCTCAATGAGAATCACCTTTCTGAGCAGGTCCCAGATGAGATTGGAAACTGCACAGAACTGCAAATGATAGATTTCAGCAGCAACAATTTAGACGGTCCATTGCCTAATTCCTTGTCATCACTATCTTTGCTCCAAGTATTTGATGGATCTTCAAACAGATTTTCAGGTCACATACCAGAAAGTTTCGGCCGTCTTGTTTCACTAAATAAACTAATCCTGGGCAGAAACTTGTTTTCCGGACCCATTCCTGCATCATTGGGCCAATGTTCAAGTCTCCAAATGCTTGATCTTAGTGGCAATGAACTCACAGGAAGCATTCCAGCAGAGCTGGGTCATATAGAGAATCTTGAAATTGCTCTTAACCTTAGTTTCAATTCTCTAAGTGGCCCAATTCCAGATCAAATCTCTGCTCTTACCAAGCTTTCTATTCTAGACCTTTCTCATAACCAGTTAGAGGGAGGATTAAACTCACTTGCAGGGCTAGATAATCTTGTCTCTCTCAATATTTCCTACAACAATTTCACAGGTTATCTACCAGATAATAAGCTTTTCAGGCAATTATCTCCAGAGGACCTAACTGGGAATCAAGGCCTTTGCTCATCTGGTCAAGACTCATGCTTTGTGAGTGCTTCAAGCATGACACTGAAGGGAAGTGAGGCGAGGAAGTCGCGAAGGTTTAAGGTAGCTATTGGTTTGTTAGTAGTCTTAACAGTACTACTAACAATAATGGGGATAATTGCAGTGATAAAGGCAAGAAGAACCATTAGAGATGATGATTCAGAACTAGGGGACTCATGGCCATGGCAATTCATTCCATTCCAAAAGCTAAGCTTTTCAGTGGAGCAAGTGTTGAGACGTTTAGTTGAAGGGAATATAATTGGAAAAGGATGTTCCGGTGTTGTTTATCGCGCTGAAATGGACGACGGTGAAGTCATAGCTGTGAAGAAACTGTGGCCTACAACAACGGATGTAGAAGAAGGATTCAAGGATGATAAAAGTGGAATCCGCGACTCATTCTCAACTGAGGTGAAAACACTTGGCTCGATCCGTCATAAGAACATTGTTAGATTCTTGGGATGTTGTTGGAATAAAAACACAAGATTGCTGATATATGATTATATGGCAAATGGAAGTTTAAGTAGTCTTCTTCATGAGAGGACAGGGAATTGTCTGGAATGGGAACTCAGGTACAGAATTCTGTTAGGAGCTGCAGAAGGCCTTGCATATTTGCACCATGACTGTGTGCCTCCCATAGTACATAGAGACATCAAAGCCAATAACATCCTCATTGGCATTGAGTTTGAGCCTTATATTGCAGACTTTGGCTTAGCCAAGCTAGTTGATGATGGTGGTTTTGGTCGTTCCTCCAATACAGTTGCTGGTTCTTATGGATACATTGCTCCAGAATATGGATTCATGATGAAGATCACGGAGAAGAGCGATGTTTATAGCTATGGAGTAGTTATGTTGGAAGTCTTGACAGGCAAGCAACCGATAGATCCAACGATACCAGAGGGCCAACATGTGGTTGATTGGGTGAGACAGAAAAGAAGGGATGAAGTGCTTGACCTGAGCCTACTGTCAAGACCAGAATCAGAAATAGAGGAAATGATGCAGGCACTAGGCATAGCCTTGTTGTGTGTAAACTCATCCCCAGATGAGAGGCCAACAATGAAAGATGTTGCAGCAATGCTAAAAGAGATCAAACAAGAAAGAGAAGAATATGCAAAAGTTGATGCACTTTTAAAGGGATCTCCTGCAAATAATGATGTCAAAGCAGCAGCAGCAGCAGCAACATCTTCATCATTGCCATCTTTGAAGAATTTGTACCGGGAAGGCGATAATAACACGATCTTCTCTGTATCTTCACTGCTTCATTCGTCTTCTTCTTCCAGTGCCAAAGTGGGTTTAAAGTGA 3435 0.4189 MPCSRQSFCISSSSSSSSSSSSSSSSSSLFCIVLFHSSFLYGLAFSANHEASVLFSWLHSSASPPPPSFSNWNILDANPCNWTFLTCSPQGFVTEINIQSIQLELPLPSNLSSFLHLQKLVISDANLTGTIPISIGDCSALSLIDLNSNNLVGSIPSSIGKLQNLESLSLNTNQLTGKIPVELGNCINLKSLILFDNQLSGVIPSEIGKLSKLEILRAGGNKDLVGKIPEEIGECSNLTDLGLADTGLSGSLPASLGKLSKLQTLSIYTAMLSGEIPAELGNCSELVDLFLYENSLSGSIPPELGKLQKLEQLFLWQNSLVGAIPEEIGNCTSLKRIDLSLNSLSGTIPLSFGGLLELEEFMISDNNVSGSIPPSLSNASFLQQLQVDTNQLSGLIPPELGRLAKLTVFFAWQNQLEGSIPSSLANCSNLQALDLSHNELTGSIPPGLFQLQNLSKLLLISNDISGSIPSEIGLCSSLIRLRLGKNRIAGGIPKSIGSLKNLNFLDLNENHLSEQVPDEIGNCTELQMIDFSSNNLDGPLPNSLSSLSLLQVFDGSSNRFSGHIPESFGRLVSLNKLILGRNLFSGPIPASLGQCSSLQMLDLSGNELTGSIPAELGHIENLEIALNLSFNSLSGPIPDQISALTKLSILDLSHNQLEGGLNSLAGLDNLVSLNISYNNFTGYLPDNKLFRQLSPEDLTGNQGLCSSGQDSCFVSASSMTLKGSEARKSRRFKVAIGLLVVLTVLLTIMGIIAVIKARRTIRDDDSELGDSWPWQFIPFQKLSFSVEQVLRRLVEGNIIGKGCSGVVYRAEMDDGEVIAVKKLWPTTTDVEEGFKDDKSGIRDSFSTEVKTLGSIRHKNIVRFLGCCWNKNTRLLIYDYMANGSLSSLLHERTGNCLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGIEFEPYIADFGLAKLVDDGGFGRSSNTVAGSYGYIAPEYGFMMKITEKSDVYSYGVVMLEVLTGKQPIDPTIPEGQHVVDWVRQKRRDEVLDLSLLSRPESEIEEMMQALGIALLCVNSSPDERPTMKDVAAMLKEIKQEREEYAKVDALLKGSPANNDVKAAAAAATSSSLPSLKNLYREGDNNTIFSVSSLLHSSSSSSAKVGLK 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1088 1144 Gene3D Ribonuclease Inhibitor 46 222 IPR032675 -
Alju12g1088 1144 Gene3D Ribonuclease Inhibitor 455 715 IPR032675 -
Alju12g1088 1144 Gene3D Ribonuclease Inhibitor 223 454 IPR032675 -
Alju12g1088 1144 SMART LRR_typ_2 307 331 IPR003591 -
Alju12g1088 1144 SMART LRR_typ_2 571 595 IPR003591 -
Alju12g1088 1144 SMART LRR_typ_2 644 666 IPR003591 -
Alju12g1088 1144 SMART LRR_typ_2 427 451 IPR003591 -
Alju12g1088 1144 SMART LRR_typ_2 162 186 IPR003591 -
Alju12g1088 1144 SMART LRR_typ_2 596 619 IPR003591 -
Alju12g1088 1144 SMART LRR_typ_2 667 692 IPR003591 -
Alju12g1088 1144 SMART LRR_typ_2 499 523 IPR003591 -
Alju12g1088 1144 Gene3D Transferase(Phosphotransferase) domain 1 880 1091 - -
Alju12g1088 1144 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 880 1089 - -
Alju12g1088 1144 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 776 879 - -
Alju12g1088 1144 Coils Coil 1064 1084 - -
Alju12g1088 1144 Pfam Leucine rich repeat 556 608 IPR001611 GO:0005515
Alju12g1088 1144 Gene3D Phosphorylase Kinase; domain 1 778 879 - -
Alju12g1088 1144 FunFam Piriformospora indica-insensitive protein 2 302 394 - -
Alju12g1088 1144 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 544 1071 - -
Alju12g1088 1144 ProSiteProfiles Protein kinase domain profile. 793 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju12g1088 1144 ProSiteProfiles Leucine-rich repeat profile. 429 451 IPR001611 GO:0005515
Alju12g1088 1144 Pfam Leucine rich repeat N-terminal domain 47 88 IPR013210 -
Alju12g1088 1144 PRINTS Leucine-rich repeat signature 644 657 - -
Alju12g1088 1144 PRINTS Leucine-rich repeat signature 430 443 - -
Alju12g1088 1144 ProSitePatterns Serine/Threonine protein kinases active-site signature. 924 936 IPR008271 GO:0004672|GO:0006468
Alju12g1088 1144 MobiDBLite consensus disorder prediction 1 24 - -
Alju12g1088 1144 Pfam Leucine Rich Repeat 429 448 IPR001611 GO:0005515
Alju12g1088 1144 SMART LRR_sd22_2 595 624 - -
Alju12g1088 1144 SMART LRR_sd22_2 644 669 - -
Alju12g1088 1144 SMART LRR_sd22_2 523 549 - -
Alju12g1088 1144 SMART LRR_sd22_2 162 183 - -
Alju12g1088 1144 SMART LRR_sd22_2 427 456 - -
Alju12g1088 1144 ProSitePatterns Protein kinases ATP-binding region signature. 799 822 IPR017441 GO:0005524
Alju12g1088 1144 SUPERFAMILY L domain-like 396 711 - -
Alju12g1088 1144 FunFam Predicted protein 203 301 - -
Alju12g1088 1144 Pfam Protein tyrosine and serine/threonine kinase 796 1070 IPR001245 GO:0004672|GO:0006468
Alju12g1088 1144 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 429 716 - -
Alju12g1088 1144 SMART serkin_6 793 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju12g1088 1144 SUPERFAMILY L domain-like 57 416 - -
Alju12g1088 1144 FunFam Nuclear pore complex protein NUP107 47 202 - -
Alju12g1088 1144 SUPERFAMILY Protein kinase-like (PK-like) 770 1071 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1088 Alju-ChrAlju12 31473613 31477575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1088 45 1090 Receptor kinase-like Gene Family AT5G56040 49.576 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Alju12g1088 PK_Tyr_Ser-Thr 1.5e-43 CL0016