Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1084 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGGCAAGTGACTTTCTCCAAAAGGAGAAATGGATTATTCAAGAAAGCTCATGAGATCTCTGTCCTCTGTGACGCTGAGGTTGCTCTTATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAGTATGCCACAGATTCTTGCATGGAGAAGATTCTGGAACGCCATGAAAGGTATGCTTATGCAGAGAGACAGCTAGCTGGAGGAAATGACCCTGAGTCGCAGGAAAACTGGACGATTGAATATTCAAGACTGAAAGCTAAGATAGAGCTGTTGCAGAGGAACCATAGGCACTATATGGGAGAAGATCTGGGTTCCATGAGCCTTAAGGAGCTCCACAGTCTGGAGCAGCAGCTTGATGCTTCCATCAAACTAATTCGCACCCGCAAAAACCAGCTCATGTATGAGTCCATTGCCGAGCTTCAGAAAAAGGAGAAAGTGATACAGGAACAGAATAACATGCTGGCAAAGAGGATAAAGGAGAAAGAGAAGGCTGTGGCGGCGGCACAGCACAGCCATATGACATGGGAGCAGCAAAACCTGGGAGGACCCAATTCAGCTTACCTCCTCCCACCTACTCTTCATCCCACTCTCCACATTGGAGGGAATTACAGAGAGGAAGGAGCAGAAAGGAACGAGCTTGACCTAACCCTGGAACCACTCTATTCCTGCAACCTCGGATGTTTTTAA 732 0.4713 MGRGRVQLKRIENKINRQVTFSKRRNGLFKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLAGGNDPESQENWTIEYSRLKAKIELLQRNHRHYMGEDLGSMSLKELHSLEQQLDASIKLIRTRKNQLMYESIAELQKKEKVIQEQNNMLAKRIKEKEKAVAAAQHSHMTWEQQNLGGPNSAYLLPPTLHPTLHIGGNYREEGAERNELDLTLEPLYSCNLGCF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1084 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Alju12g1084 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju12g1084 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Alju12g1084 243 Coils Coil 152 172 - -
Alju12g1084 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju12g1084 243 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Alju12g1084 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju12g1084 243 FunFam Floral homeotic protein APETALA 1 13 68 - -
Alju12g1084 243 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Alju12g1084 243 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju12g1084 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju12g1084 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju12g1084 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju12g1084 243 Coils Coil 89 116 - -
Alju12g1084 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju12g1084 243 Pfam K-box region 87 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1084 Alju-ChrAlju12 31410433 31414840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1084 1 243 MADS-box Gene Family AT1G26310 60.236 7.89e-100 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju12g1084 K-box 9.4e-31 No_clan