Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1058 ATGTCTGACAAAGAAAATTTTGAGATAGATAGAAACGAAGATCATATGAGCTATTCATCTAGTATGGCCTCTGATTGGAGATTTGGGGTTCCTAATCTTGCAAATACATCAGTGGGTTTGGTTGATTCATATGTTCCAAGCTTCTGGGATCATTCCATGAGTTCTCAAAACTTGGGGTCATGTGACATCAATGTGCAGAACAACAATGGTAGCTCCTCAAGCTCAATTGTAAATAGAAAAGATGGTCTTGCTTTAGTTGGTCATGATAGAACACTTGAAATGGGTTGGAACCCAACAAGTTCTATTTTAAAAGGGGATGCTTTCTTACCAAACAGACCAACAATTTTCCCTCAGACTTTGTCTCAGATTCCCACTGATTCTGCCTTTATTGAGAGAGCTGCAAGATTCTCATGCTTCAGTCAGTTCAATGGAGGGAATTTCAGTAGTATGATGAACTCATTTGGGATTCCTCAATCCATGGGTCTGTATGCTGGAAGAGATAATGCTCTTGCAGGCCATGGCTTAAAATCAGGTCTTGGAGCTAGATCTCAAGAAAGTTCTCAGGATGTTCATGTTGGTGAATCTGCAAAAGATGTGTCTCCATCTGTTCAGAATTTGGCCATTAAAGGAAGTCCACTCAAGAATGACAAGAGAAGTGAAAGCCTAGTGACATCTCAAGATGAAGCAAAACAGACTCTTGGCAGGTCTGTTAACGAGTCTGATAGAGCAGAATCAAGTGGTGATGATGATGATTCTGGTGGTCAAAATGATATGCCTATGTTGGAGGGTACAACAAGTGGGGAACCTTCTAACAAAGGACTAAACGCAAAGAAAAGGAAAAGAAGTGGGCAGGATTCTGATAATGAAAAAGCCAATGGAGGTTCTCAACCCCCAAGTGAGGCTGCAATGGACAATTCTGAGAGCCGACAGAAGGGAGACCAACAACCAACTTCAACAACCAAGACTTCTGGGAAGAATACCAAACAGGGTTCTCAAGCTTCTGATCCACCAAAGGAGGAATACATACATGTTAGAGCTCGCCGAGGTCAAGCAACGAATAGCCATAGCCTTGCTGAGAGAGTAAGGAGGGAAAAGATCAGTGAAAGGATGAAATTTCTTCAAGACCTTGTTCCTGGATGCAGTAAGGTGACTGGCAAGGCGGTTATGCTAGATGAAATCATTAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACTGTAAATTCACGGCTGGATTTTAATCTTGAAGGACTTGTTGCCAAAGATATGCTTCAGCAACGGCCTGGCCCCTCATCTGCATTGAGGTTTTCTCCAGAAATGCCTTTGGTTTTTCCTCCTTTACATCCATCTCAACCAGGCCTTCTACCGTCAAATCTTCCCAGCATAGCAAACTCATCTGATATACTTCGAAGAACCATTCATCCACAGTTAACTCCCGCGGTTGGAGGATTCAAGGATCCTAATCAGCTACCTGAGATGTGGGAGGATGAACTGCACAATGTTGTACAGATGAGCTATGCACCAACTGCTCCACCGAGTAGTCAAGACGATGATGGTAACAATGCATCAGCAGGAGAAATGAAGGTTGAACTATGA 1617 0.4261 MSDKENFEIDRNEDHMSYSSSMASDWRFGVPNLANTSVGLVDSYVPSFWDHSMSSQNLGSCDINVQNNNGSSSSSIVNRKDGLALVGHDRTLEMGWNPTSSILKGDAFLPNRPTIFPQTLSQIPTDSAFIERAARFSCFSQFNGGNFSSMMNSFGIPQSMGLYAGRDNALAGHGLKSGLGARSQESSQDVHVGESAKDVSPSVQNLAIKGSPLKNDKRSESLVTSQDEAKQTLGRSVNESDRAESSGDDDDSGGQNDMPMLEGTTSGEPSNKGLNAKKRKRSGQDSDNEKANGGSQPPSEAAMDNSESRQKGDQQPTSTTKTSGKNTKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNSRLDFNLEGLVAKDMLQQRPGPSSALRFSPEMPLVFPPLHPSQPGLLPSNLPSIANSSDILRRTIHPQLTPAVGGFKDPNQLPEMWEDELHNVVQMSYAPTAPPSSQDDDGNNASAGEMKVEL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1058 538 FunFam Basic helix-loop-helix transcription factor 347 419 - -
Alju12g1058 538 SMART finulus 356 406 IPR011598 GO:0046983
Alju12g1058 538 MobiDBLite consensus disorder prediction 258 272 - -
Alju12g1058 538 MobiDBLite consensus disorder prediction 175 338 - -
Alju12g1058 538 CDD bHLH_AtBPE_like 340 425 - -
Alju12g1058 538 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 235 446 IPR024097 GO:0006355
Alju12g1058 538 MobiDBLite consensus disorder prediction 273 287 - -
Alju12g1058 538 MobiDBLite consensus disorder prediction 514 528 - -
Alju12g1058 538 MobiDBLite consensus disorder prediction 234 249 - -
Alju12g1058 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 419 IPR036638 GO:0046983
Alju12g1058 538 Pfam Helix-loop-helix DNA-binding domain 353 401 IPR011598 GO:0046983
Alju12g1058 538 Coils Coil 397 417 - -
Alju12g1058 538 MobiDBLite consensus disorder prediction 288 334 - -
Alju12g1058 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 400 IPR011598 GO:0046983
Alju12g1058 538 Gene3D - 347 422 IPR036638 GO:0046983
Alju12g1058 538 MobiDBLite consensus disorder prediction 514 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1058 Alju-ChrAlju12 31062894 31066103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1058 1 537 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.841 1.20e-113 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju12g1058 HLH 6.9e-06 No_clan