Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0995 ATGAAAAGAGAGGAAGATTATGGGCAGTGTTCTTCACAAGCCATAAACAACTATCACACCTATCAAGAGCAGCTATTTATGCAACAGATGCAGCAACAGAACACCATGTTTCCAGAAGTTTCTCCCTGGAATATCCCTCCGGTTCACTCCTTCAACCAGCCGGTTCACCATCACTTTTCCAATTCGGTTCGAGTTGATCATGACCCGTTTCTTCTTCCTCCTCCGCCGCCACCTCATCCTTCTGGAGGAGGACCCTATGGTGGTTTGTTTAACAGGAGGGTTCCTAATTCTCTGCAGTTTGCCGCCTACGACGGTTGTTCACCTTCCGACCATCTCCGGCTCTTGTCAGAGGCTCTTGGACCCATGGTTCAACCCGGTTCGGCTCCGTTCGGACTCCAAGCCGAGCTGGGAAAGATGACGGCTCAGGAGATTATGGATGCTAAGGCTCTTGCAGCGTCTAAGAGTCATAGTGAAGCTGAAAGGAGACGTAGAGAGAGAATCAATAACCATCTTGCCAAGCTTCGTAGCTTATTGCCCAGCACAACCAAAACGGATAAAGCATCATTGCTGGCAGAAGTGATTCAGCATGTGAAGGAACTGAAGAGGCAGACATCGTTAATAGCAGAAACAAGCCCGGTGCCGACCGAGGTGGACGAGCTGACGGTGGACACGGCGGACGACGACAACATGGACGGCAAGTTCGTGATCAAAGCCTCATTCTGCTGCGAGGACAGGTCAGATCTCTTGCCGGAGCTCATCAAGACACTGAAGGCACTAAAGCTGAGAACCCTCAAAGCAGAGATCACCACACTCGGTGGCCGAGTCAAGAATGTGTTGTTCATCACCGGCGATGAAGACGGCGGCGGCGACTCACAAAGTAGCGGCGAGCTTCATCATCATCATAATCATCAGAACCAGATGATGCAGCAGCAACAATATTGTATAAACTCTATACAAGAAGCTCTTAGGGCTGTGATGGAGAAAAGTGGTGGTGGGGATGAGACAACAAGTGGGGCTGTTAAGAGACAAAGGATTAATAACCTTAATATTCTCGAACACAGGTCCTTATAA 1071 0.4939 MKREEDYGQCSSQAINNYHTYQEQLFMQQMQQQNTMFPEVSPWNIPPVHSFNQPVHHHFSNSVRVDHDPFLLPPPPPPHPSGGGPYGGLFNRRVPNSLQFAAYDGCSPSDHLRLLSEALGPMVQPGSAPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEVDELTVDTADDDNMDGKFVIKASFCCEDRSDLLPELIKTLKALKLRTLKAEITTLGGRVKNVLFITGDEDGGGDSQSSGELHHHHNHQNQMMQQQQYCINSIQEALRAVMEKSGGGDETTSGAVKRQRINNLNILEHRSL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0995 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Alju12g0995 356 Pfam Helix-loop-helix DNA-binding domain 154 200 IPR011598 GO:0046983
Alju12g0995 356 CDD bHLH_AtAIG1_like 146 223 - -
Alju12g0995 356 SMART finulus 157 206 IPR011598 GO:0046983
Alju12g0995 356 FunFam transcription factor bHLH30 146 209 - -
Alju12g0995 356 PANTHER TRANSCRIPTION FACTOR BHLH30 16 349 IPR045847 GO:0003700|GO:0006355
Alju12g0995 356 Gene3D - 146 207 IPR036638 GO:0046983
Alju12g0995 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 207 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0995 Alju-ChrAlju12 29959146 29961250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0995 11 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 50.646 4.04e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju12g0995 HLH 1.7e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g0995 12 29959146 29961250 Alju12g0995 12 29959146 29961250 ECH