Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0994 ATGGCTCGGCCAAGAGTGATTACCTGGGGAAGGGTTCGAAAATCTCTTCAAGCTCTGTTTGCTTATGCCTTACTCTTCTCATTCACTCTCCTTCTTGCTCTCAAGATTGACAATGTCGTCCATTACTCATGGTGGATTATATTTTCACCTCTCTGGCTTTTTCATGGGGTTGTATCTCGAGGTCGGTTTTCCCTGCCTGCTCCTTCAATGCCTCATGATCGCCATTGGGATCCTTGTCATACCATCATGGGAATTCCGTTGCTTGTTGCTTTTGAGCTTCTTCTTTGTGCACATCTTGAGAGCTCTTATGAGGTCAATTTAAAGATAGTTTTCTCACCCTTGTTGGCTCTTGAGGTGGCGATTATAATTGATAACTTTAGGATTTGTAGGACATGTCTGCAAGCTGATGAAAATATGATTGAAGAAGCAATGCGGAGAACCCTTCCTCACTTCTGCACTGCAATATCCATGGCCTTCTTTATTGCTGCTACAGTGTCTACTCTTTGTAAGATATGCGGTGATGAAGCTGCACTAGGCTGGTGGGAAATATTTGAATACTTTGGTGTTGGAGAGTGCATTGCCATTTTTCTTTCTACAAAGTGGCACAATCCAAGAATTCATGGGAATGATGAGTATACTGAATCATCGTCATTATTAATAAGAAACCAGGACTTGGGTAGCATCTTAGATAGTCAGCAAAGTGGGTCAAGCAATCTGGAGAACATTGGTGGGCACATTATGAAGATTCCTATCATTGCTTTCCAAATACTGCTGATTATGCGTTTAGAGGGAACTACTGCAAGTGCCAGAAATATGCCGTTTCAGACTGTTTTTTCTCCCCTTTTTATGTTGCAAGGAGCTGTTGTTATATTTGCTGCTTTCAGATTAGTGGAAAATCTAGTACCTAAACTTCACATTGGAGAAATTTCTGCAAGATACTTGGCTGTTTCATCAAAAGCCCGCGATTTCTTTGGTTTCATAGATCATGGGTCAAGGTGGCTGGGTTGGTGGTCGATAGATGAAACAAGCAGAGAGGAAGAAGCTAGAATGTACTATGATGGGAGTTCAACGTATAATAGTTTCTCCCCTGATAAGGTGAAGAAAATGCCTAATGAAGCTCTTGCTGAGGAGATTCTTAGACTACAGGGTGCATTGACTGAGCAGACCAATGCTGCAAAATCTAGCCAGCAGGAGTATGAAAGACTTCTAAATGAAAAGATCCTATGCAGAGTTTGCTTTGATAAGGAGATAAATGTGATTCTTCTTCCTTGCAGGCACCATACCATTTGCAGCAATTGCCGCAAAAAATGTCCGACGTGTCCTTTCTGCCGTGTCCCCATTGAAGATGTAATTCCTGTATAA 1362 0.4185 MARPRVITWGRVRKSLQALFAYALLFSFTLLLALKIDNVVHYSWWIIFSPLWLFHGVVSRGRFSLPAPSMPHDRHWDPCHTIMGIPLLVAFELLLCAHLESSYEVNLKIVFSPLLALEVAIIIDNFRICRTCLQADENMIEEAMRRTLPHFCTAISMAFFIAATVSTLCKICGDEAALGWWEIFEYFGVGECIAIFLSTKWHNPRIHGNDEYTESSSLLIRNQDLGSILDSQQSGSSNLENIGGHIMKIPIIAFQILLIMRLEGTTASARNMPFQTVFSPLFMLQGAVVIFAAFRLVENLVPKLHIGEISARYLAVSSKARDFFGFIDHGSRWLGWWSIDETSREEEARMYYDGSSTYNSFSPDKVKKMPNEALAEEILRLQGALTEQTNAAKSSQQEYERLLNEKILCRVCFDKEINVILLPCRHHTICSNCRKKCPTCPFCRVPIEDVIPV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0994 453 Pfam Zinc finger, C3HC4 type (RING finger) 407 450 - -
Alju12g0994 453 Coils Coil 385 405 - -
Alju12g0994 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 453 IPR013083 -
Alju12g0994 453 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 453 - -
Alju12g0994 453 ProSiteProfiles Zinc finger RING-type profile. 409 444 IPR001841 -
Alju12g0994 453 SMART ring_2 409 440 IPR001841 -
Alju12g0994 453 Pfam Transmembrane Fragile-X-F protein 34 283 IPR019396 -
Alju12g0994 453 SUPERFAMILY RING/U-box 400 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0994 Alju-ChrAlju12 29945410 29950469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0994 11 453 C3H Transcription Factor Family AT1G73950 54.204 7.03e-170 483