Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0987 ATGGATGCGAGTAGTAGTGTAGATGAAAGCACGACGAGTGATTCGGTGTCCATATCGCTTTCTCCGGCGATGACTGTGTTGCCGCTCAGCAGGACACCTCAGAAGTCATCGCCGCCGCCGCCCAATAGTCTCTGCAGGGTTGGTAGCGGAGCCAGCACGATTGTGGACTCCTCCGATGGCGGCCTCGAGGCCGAGTCCCGGAAACTACCGTCGTCGAAATACAAGGGAGTGGTGCCGCAGCCCAATGGACGATGGGGGGCCCAGATATATGAGAAGCACCAGCGTGTTTGGCTTGGCACCTTCAACGAGGAAGATGAAGCCGCCCGGGCCTACGACATCGCCGCCCAGAGATTCCGCGGCAAGGACGCCGTCACTAACTTTAAGCCCCTCAACGGCAACAACTGCTCCGACGATCCGTCCGACGATGATGATTTCGAGACGGAGTTCCTCAACTCGCATTCCAAGACAGAGATCGTGGACATGCTGAGGAAGCACACCTACAATGACGAACTTGAGCAGAGCAAGCGCAACCGCGGGGTGGCCGGAGGAGGCCACTACAAGTCTAGGAAGGACGGCGGCGCAGGCTCGTGCTTCGACCGGACTGAGAAAGCCCACGACCAGCTGTTCGAGAAAACCGTCACGCCCAGTGACGTGGGGAAGCTGAATCGTTTGGTGATACCCAAGCAGCACGCGGAGAAGCACTTCCCGTTGCAGAGCGGAGGCGCTTCTTGTGCGACGCCTGTTGCGGCGGCGAAGGGGGTGCTTTTGAATTTCGAGGATGATGGAGGGAAAGTGTGGAGGTTTCGGTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTGACGAAAGGGTGGAGCAGGTTCGTGAAGGAGAAGAACCTGAAAGCCGGCGATACGGTGAGTTTCCACCGGTCAACCGGACCGGACCGGCAGCTCTACATTGACTGGAAAGCCCGGAATAACCAGACAGTCGGCGGTGAAGGGACCGGGATGGAGGGGCTGTACAATCCGGTTGGGCCTGTGGTGGAGCCGGTTCAGATGGTTCGGCTCTTTGGGGTGAACATTTTGAAAATGCCGGCGTCGGATTCTGTCATAGGCGGGGGCTGCAACGGCAAGAGGAAAGAGATGGAGCTGTTAACGTTAGAGTTTAGCAAGAAGCCAAAGATAATTGGAGCTTTGTAA 1182 0.5719 MDASSSVDESTTSDSVSISLSPAMTVLPLSRTPQKSSPPPPNSLCRVGSGASTIVDSSDGGLEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLNGNNCSDDPSDDDDFETEFLNSHSKTEIVDMLRKHTYNDELEQSKRNRGVAGGGHYKSRKDGGAGSCFDRTEKAHDQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQSGGASCATPVAAAKGVLLNFEDDGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVSFHRSTGPDRQLYIDWKARNNQTVGGEGTGMEGLYNPVGPVVEPVQMVRLFGVNILKMPASDSVIGGGCNGKRKEMELLTLEFSKKPKIIGAL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0987 393 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Alju12g0987 393 SUPERFAMILY DNA-binding domain 72 128 IPR016177 GO:0003677
Alju12g0987 393 MobiDBLite consensus disorder prediction 1 32 - -
Alju12g0987 393 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 68 363 IPR044800 GO:0003700
Alju12g0987 393 Pfam B3 DNA binding domain 209 317 IPR003340 GO:0003677
Alju12g0987 393 CDD AP2 72 127 IPR001471 GO:0003700|GO:0006355
Alju12g0987 393 SMART B3_2 209 320 IPR003340 GO:0003677
Alju12g0987 393 MobiDBLite consensus disorder prediction 41 56 - -
Alju12g0987 393 SUPERFAMILY DNA-binding pseudobarrel domain 208 314 IPR015300 -
Alju12g0987 393 FunFam AP2 domain-containing protein RAP2.8 72 129 - -
Alju12g0987 393 Gene3D - 198 329 IPR015300 -
Alju12g0987 393 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
Alju12g0987 393 MobiDBLite consensus disorder prediction 1 75 - -
Alju12g0987 393 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Alju12g0987 393 CDD B3_DNA 208 305 IPR003340 GO:0003677
Alju12g0987 393 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
Alju12g0987 393 ProSiteProfiles B3 DNA-binding domain profile. 209 320 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0987 Alju-ChrAlju12 29742637 29743818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0987 4 392 RAV Transcription Factor Family AT1G13260 58.333 1.88e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Alju12g0987 B3 4.1e-28 CL0405