Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0969 ATGAAGATATTCGTCAAGACTCTCAAGGGCACCAGCTTCGAAATCGAAGTCGAGCCTGAGGATAAGGTTGCTGATGTGAAGAAACATATAGAAACTGTCCATGGTGAAACTTGCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAGGTTCTCAATGATAATACTACCTTGGAGGAAAATAAAGTAGTTGAACACAGTTTTATTGTAATCATGCTATCCAAGGCTAAGAGTTCATCAGGCCAGGGATCTACTACTGCACCTTCGGTTAAGGCGCCTCAGACTAGTTCAGCTCCTACGCCATCCCTGGTGTCAACGGAAGCGTCTCAAGCTCCTGCTACAGCTGGGGCTTCGCCTGCCCCTGCCCCTGCACCTGCACCGGCCCCTGCACCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTTCCCCTGCACCTGCACCTTCACCTTCACCTTCACCTTCACCGGCTCCAGCTCCTGCTGTGGCAGGGTCTGATATCTATGGGCAGGCAGCATCTAATCTTGTTGCTGGGACCAACTTGGAGGGAACAATTCAACAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTCCAAGCACTTCGTGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATACTTGTATTCAGGTATTCCAGAGCAAGCTGAAGCCCCCCCTGTGGCTCGTGCACCTGCAAGCAGTGCCCAGACTGGAAATGCTCCATCTGCAGCTCCACAAGCAGCACAACCTGCACCTGTACCTTCAAGTGGACCTAATGCTAATCCTTTAGATCTCTTTCCTCAGGGCCTGCCAAATGTTGGTGCTGGTGGAGCTGGTGCTGGCAATCTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCATTGCGAGCCATGGTTCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGATTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCAGTGGAAGGTGGTGAGGGGAATATATTGGGGCAGCTGGCTAACGCCATGCCGCAATCAATATCTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGATTCGATCGAGCACTGGTTTTGGAGGTGTACTTCGCATGTAACAAAAATGAAGAATTGGCTGCTAACTACCTGTTAGATCACATGCATGAGATGGACGAAAAGGATGTTTTTAACCTCCTCGTTATCCCATGTATCTACCAATTCTCTCTGGTTCTAGGATTCTTCAGTGTTATTCATATAAATAGTTTCTTTGGAATATTCTTATACAGGACGTGA 1368 0.4905 MKIFVKTLKGTSFEIEVEPEDKVADVKKHIETVHGETCYPAAQQMLIHQGKVLNDNTTLEENKVVEHSFIVIMLSKAKSSSGQGSTTAPSVKAPQTSSAPTPSLVSTEASQAPATAGASPAPAPAPAPAPAPAPAPAPAPAPAPAPSPAPAPSPSPSPSPAPAPAVAGSDIYGQAASNLVAGTNLEGTIQQILDMGGGSWDRDTVVQALRAAYNNPERAVEYLYSGIPEQAEAPPVARAPASSAQTGNAPSAAPQAAQPAPVPSSGPNANPLDLFPQGLPNVGAGGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLANAMPQSISVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEMDEKDVFNLLVIPCIYQFSLVLGFFSVIHINSFFGIFLYRT 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0969 455 SUPERFAMILY UBA-like 183 238 IPR009060 GO:0005515
Alju12g0969 455 CDD UBA1_Rad23_plant 179 228 - -
Alju12g0969 455 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Alju12g0969 455 Pfam UBA/TS-N domain 373 408 IPR015940 -
Alju12g0969 455 Pfam UBA/TS-N domain 188 223 IPR015940 -
Alju12g0969 455 Gene3D - 283 348 IPR036353 GO:0003684|GO:0006289|GO:0043161
Alju12g0969 455 FunFam UV excision repair protein RAD23 1 80 - -
Alju12g0969 455 MobiDBLite consensus disorder prediction 77 166 - -
Alju12g0969 455 SMART ubq_7 1 75 IPR000626 GO:0005515
Alju12g0969 455 FunFam UV excision repair protein RAD23 B 282 348 - -
Alju12g0969 455 SUPERFAMILY Ubiquitin-like 1 82 IPR029071 -
Alju12g0969 455 FunFam UV excision repair protein RAD23 homolog 364 412 - -
Alju12g0969 455 Gene3D - 1 77 - -
Alju12g0969 455 CDD Ubl_Rad23 1 74 - -
Alju12g0969 455 SMART uba_6 373 410 IPR015940 -
Alju12g0969 455 SMART uba_6 185 225 IPR015940 -
Alju12g0969 455 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 406 - -
Alju12g0969 455 MobiDBLite consensus disorder prediction 119 163 - -
Alju12g0969 455 PRINTS DNA repair protein Rad23 signature 318 340 IPR004806 GO:0006289
Alju12g0969 455 PRINTS DNA repair protein Rad23 signature 367 383 IPR004806 GO:0006289
Alju12g0969 455 PRINTS DNA repair protein Rad23 signature 384 398 IPR004806 GO:0006289
Alju12g0969 455 PRINTS DNA repair protein Rad23 signature 399 414 IPR004806 GO:0006289
Alju12g0969 455 NCBIfam UV excision repair protein Rad23 118 415 IPR004806 GO:0006289
Alju12g0969 455 Gene3D - 178 228 - -
Alju12g0969 455 SMART CBM 290 333 IPR006636 -
Alju12g0969 455 FunFam UV excision repair protein RAD23 homolog 178 228 - -
Alju12g0969 455 Pfam XPC-binding domain 292 347 IPR015360 GO:0003684|GO:0006289|GO:0043161
Alju12g0969 455 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 182 226 IPR015940 -
Alju12g0969 455 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Alju12g0969 455 MobiDBLite consensus disorder prediction 77 114 - -
Alju12g0969 455 SUPERFAMILY XPC-binding domain 288 354 IPR036353 GO:0003684|GO:0006289|GO:0043161
Alju12g0969 455 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 370 411 IPR015940 -
Alju12g0969 455 SUPERFAMILY UBA-like 354 416 IPR009060 GO:0005515
Alju12g0969 455 Gene3D - 365 412 - -
Alju12g0969 455 MobiDBLite consensus disorder prediction 234 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0969 Alju-ChrAlju12 29492875 29499456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0969 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 2.80e-08 50.4