Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0955 ATGACTTCTTCTAAGAACGCCGCCTCCCACGCCGTAGGCGGCAAGACTGCCAGAGCCTGCGACAGCTGCATAACGAAGCGTGCTCGCTGGTACTGTGCCGCCGACGATGCTTTCCTCTGCCAATCCTGTGACTCCCTCGTTCACTCCGCCAACCCATTGGCTCGCCGCCATGAAAGGCTCCGCCTCAAAACTTCCTCCTTTAAATCCTCCTCCTCCTCCGTCGATCTCACTCTCGCTCCCTCCTGGCACCGTGGTATCACCAAGAAGGCTCGCACGCCTCGACATGGAAAAAACAGCCACTCTTCCACCGCCGCCGCCGCCGCCCATCAAACCACCAGGAACCCCTTCCATCTCGTGCCGGAAGTGGCTTCCGATGAATATTCCAATTCTCACGACGAAAATGAGGAGCAGCTTCTTTATCGGGTACCCATATTCGACCCGTTTGTAACAGAGCTTTGTGCTACTCCCCCATCCTCTGCAACTTCAGCTGAAGCAGCAGTAACGATCGATACGCCCCGTCCGAACCAGAAAGAAAGCAATAAAGTCGTCTCATCGCCGGGAAACAAAAGCAATAGTAATAATAATGGGGTGGACAATTTACATGGCTTTCTTCCATCGGAAATGGAACTTGCTCAGTTCGCCGCCGATGTTGAGAGTTTACTGGGCAGGGGATTAGAGAATGAGTGTATAGGAATGGAGGATTTAGGGCTTATTGACAGTAAAGAGAAGGAATCGAGGGAATATTCTGTGGGCAGTGAAAAAGTGAAGGTGGAGGAAGATGATGAAGAAAGCCCATGTAAGATTGAAACAGATGAGATGGAGATTGGAATCAGAGACGCATTTGAATTGAACTTCGATTACGATGACTCTCCGGCAACACGCGAACAACCGGACAACAACGTCGACGAGGATGAGAAGAAGGTCAACAAAGAAGAAGTCAAAGCGAATTGTAATGAGAGAAAGAAGAAGATATTGTTGCAGTTGGACTACGAAGCAGTCATATCAGCTTGGGCATCTCAGAAATCTCCATGGACGACCGGCGGCAAACCAGACTTTGACGCCGATGAGTGTTGGCCGGAGTGCATGGGTACGTGTGGAATGGAACTTCATCAACCATACTATGGAGAAATGGGGACATACCAGGCAGGGATGGGAGACGGAGGGAGAGAGGCGAGGGTGACGAGGTACAGAGAGAAGAGGAGGACGAGGTTGTTCTCCAAGAAAATAAGGTACGAGGTTCGCAAATTGAATGCAGAGAAGAGACCCAGAATGAAAGGGAGGTTTGTGAAGAGGGCTCCTTTTGCAGCTGCTAATACGAATAATACAACACCACCTCCCTCCTGCTCTTTGCTCAACAAATTAAATTATTAA 1371 0.4996 MTSSKNAASHAVGGKTARACDSCITKRARWYCAADDAFLCQSCDSLVHSANPLARRHERLRLKTSSFKSSSSSVDLTLAPSWHRGITKKARTPRHGKNSHSSTAAAAAHQTTRNPFHLVPEVASDEYSNSHDENEEQLLYRVPIFDPFVTELCATPPSSATSAEAAVTIDTPRPNQKESNKVVSSPGNKSNSNNNGVDNLHGFLPSEMELAQFAADVESLLGRGLENECIGMEDLGLIDSKEKESREYSVGSEKVKVEEDDEESPCKIETDEMEIGIRDAFELNFDYDDSPATREQPDNNVDEDEKKVNKEEVKANCNERKKKILLQLDYEAVISAWASQKSPWTTGGKPDFDADECWPECMGTCGMELHQPYYGEMGTYQAGMGDGGREARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRAPFAAANTNNTTPPPSCSLLNKLNY 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0955 456 CDD Bbox1_BBX-like 19 62 - -
Alju12g0955 456 Pfam CCT motif 389 431 IPR010402 GO:0005515
Alju12g0955 456 ProSiteProfiles CCT domain profile. 389 431 IPR010402 GO:0005515
Alju12g0955 456 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 8 432 - -
Alju12g0955 456 MobiDBLite consensus disorder prediction 89 112 - -
Alju12g0955 456 MobiDBLite consensus disorder prediction 156 200 - -
Alju12g0955 456 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Alju12g0955 456 Pfam B-box zinc finger 17 59 IPR000315 GO:0008270
Alju12g0955 456 SMART bboxneu5 15 62 IPR000315 GO:0008270
Alju12g0955 456 MobiDBLite consensus disorder prediction 287 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0955 Alju-ChrAlju12 29085361 29087046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0955 7 431 C2C2-CO-like Transcription Factor Family AT1G25440 46.330 3.25e-107 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Alju12g0955 CCT 1.2e-17 CL0281