Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0940 ATGTCTGCTATAACAAAGAGAGATAATAATAACAACAAGATGTGTTGTAAAGAAGAGGAGAATAGTACTGAGATGAGAAGAGGCCCTTGGACTCTTGAAGAAGACAGCCTCCTCATTCACTATATCGCTCGCCACGGCGAAGGTCGTTGGAACATGTTAGCCAAAAGTGCAGGACTGAAGAGGAATGGCAAGAGTTGCAGACTCAGGTGGCTTAATTACTTGAAACCAGACATCAAGCGTGGACACCTCACCCCACAAGAACAGCTCATGATCCTAGAACTCCATTCTAGGTGGGGCAACAGGTGGTCGAAAATTGCTCAGCATCTACCAGGAAGAACTGATAATGAGATCAAGAACTATTGGAGAACCAGAGTGCAGAAACAAGCTCGCCAACTTAATATTGAATCTGGAAGCAAGAAATTCATAGATGCTATTCGCTGTTTCTGGACTCCAAGATTAGTTCAAAAGGTTGAACAACAACAGAAACTGATCAATTCTCCTTCCACTACCACCACCTCGTACTCTTGTCTCACATCAGACACAAACCTTAATCATGTTTCTTCTTCTTCATCATCTTCTCCAATGTTGTCGTCAACCAATTACTACACCAACAACAACAACTCTGTTATACCTAATTCTCTGTCCTGTTCTTCGTCATCATCACCATCTTTTCAGCAACCTCCGGCAAATTTTCCCAGCAATTTTGGCTCTGATTCATGGCAATTCTCGCAGCTTCTGGAACCTTCTTCAGAAGTACTCCCAGAAAGCTCTGGCTATATGTTAGAGAACAATAATGGTTGTTACAGCAACCCGATTCATCAGGAAAATTTGTTGGTGATGAACAATATGACTAGTACTGCTTCTGGGTATTATGGAATGGATCAGAATCTGATGAATCTGCAGGAACCAGCGACGATGACAACGCCGACAATGATGATGGAAACTTACGACATGGTGCCGTTTGATTATTATTTTCATCAGCCAACTGCAGAAAGTGATTGGGCGTTAGGAAACATGGCAGACACTTTATGGAACATGGAAGCTCTGTAA 1050 0.4248 MSAITKRDNNNNKMCCKEEENSTEMRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRNGKSCRLRWLNYLKPDIKRGHLTPQEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKKFIDAIRCFWTPRLVQKVEQQQKLINSPSTTTTSYSCLTSDTNLNHVSSSSSSSPMLSSTNYYTNNNNSVIPNSLSCSSSSSPSFQQPPANFPSNFGSDSWQFSQLLEPSSEVLPESSGYMLENNNGCYSNPIHQENLLVMNNMTSTASGYYGMDQNLMNLQEPATMTTPTMMMETYDMVPFDYYFHQPTAESDWALGNMADTLWNMEAL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0940 349 MobiDBLite consensus disorder prediction 1 20 - -
Alju12g0940 349 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 202 IPR044676 GO:0003700|GO:0006355|GO:0043565
Alju12g0940 349 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Alju12g0940 349 FunFam MYB transcription factor 84 147 - -
Alju12g0940 349 CDD SANT 84 123 IPR001005 -
Alju12g0940 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Alju12g0940 349 SUPERFAMILY Homeodomain-like 25 121 IPR009057 -
Alju12g0940 349 SMART sant 79 127 IPR001005 -
Alju12g0940 349 SMART sant 26 76 IPR001005 -
Alju12g0940 349 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 42 51 IPR001345 GO:0003824
Alju12g0940 349 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Alju12g0940 349 Gene3D - 27 79 - -
Alju12g0940 349 Pfam Myb-like DNA-binding domain 81 123 IPR001005 -
Alju12g0940 349 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Alju12g0940 349 Gene3D - 83 128 - -
Alju12g0940 349 FunFam Myb transcription factor 27 79 - -
Alju12g0940 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 74 IPR017930 -
Alju12g0940 349 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0940 Alju-ChrAlju12 28828635 28829900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0940 24 176 MYB Transcription Factor Family AT1G68320 76.471 2.87e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju12g0940 Myb_DNA-binding 6.2e-14 CL0123