Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0869 ATGCCTTCAGGATCAGTGGACTGGAGCCCCGTGAAGATGGCTTCACGGAGATGGTTATCGTCTCTGATTCGATCCTCATTACATCGATCTCCATTGAAGTCCTCCGTTACCAACTCAAGACCCAGGGTTTCTTCTCCGAGCGTTGGTCGTCCCTCTCCGTATGGCTACCTCCTCACCCGATTCGCTGAGTACGCCACATCTGCGGCAGTCGCTACACCACCGGCTCCGGCGAAGGACTCAGTTAGTTGCGGTGGTGGGAAGATCGTCGACGAGTTCACCGGCAAAGGTGCGATTGGGCAAGTGTGCCAGGTCATTGGTGCCGTCGTCGATGTTAGATTCGAGGAGGGTCTGCCACCGATCTTGACTGCACTTGAGGTTATGGATCACTCGATCCGATTGGTGCTGGAAGTGGCGCAGCACTTGGGTGAGAACATGGTTAGAACTATTGCCATGGATGGGACTGAGGGGGTTGTTAGAGGACAACGCGTGCTCAACACTGGATCCCCTATCACCGTTCCTGTTGGTAGAGCAACCCTTGGCCGCATCATTAACGTCATTGGGGAGGCTATTGACGAGAAGGGTGACCTTAAAACCGAGCACTATTTGCCCATCCATAGGGAAGCTCCTGCCTTTGTTGAACAGGCAACAGAGCAGCAGATTCTTGTCACAGGGATCAAGGTTGTCGATCTACTTGCTCCATACCAAAGGGGAGGAAAGATTGGGTTGTTTGGTGGTGCCGGTGTAGGGAAAACGGTGCTTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGGTGGTTTCTCTGTATTTGCCGGTGTTGGAGAAAGAACCCGTGAGGGAAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGAGAGAAGCAGAGTGAAAGCAAGTGTGCTCTTGTGTATGGTCAAATGAATGAGCCTCCTGGTGCCCGTGCCCGTGTTGGTCTTACTGGTCTTACTGTGGCTGAACACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTTTTCATTGACAATATTTTCCGTTTTACTCAAGCTAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATTCCGTCTGCTGTCGGTTACCAACCAACATTGGCTACTGATCTTGGAGGTCTTCAGGAACGTATTACAACCACAAAGAAAGGTTCAATTACCTCTGTCCAGGCTATATACGTTCCTGCTGATGATTTGACTGATCCAGCTCCGGCTACTACCTTCGCTCACTTGGATGCTACAACTGTGTTATCACGGCAGATCTCTGAGCTGGGTATCTATCCTGCTGTTGACCCCCTAGATTCCACATCGCGTATGCTTTCCCCACTTGTTTTGGGTGAGGACCACTATAATACTGCTCGTGGTGTACAAGAGGTCCTTCAGAACTATAAGAATCTTCAAGATATCATTGCCATTTTGGGAATGGATGAGCTCAGTGAAGATGATAAGTTGACTGTGGCCCGTGCACGTAAAATTCAAAGGTTTTTGAGCCAGCCTTTCCATGTTGCAGAAGTGTTCACGGGTGCCCCAGGCAAGTATGTGGATTTGAAGGAGAGCATTACCAGCTTCCAGGGTGTGTTGGATGGCAAATACGATGACCTTCCAGAGCAATCATTTTATATGGTTGGAGGCATTGATGAGGTCATTGCCAAGGCGGACAAGATTGCCAAGGAATCAACTTCTTAG 1710 0.4924 MPSGSVDWSPVKMASRRWLSSLIRSSLHRSPLKSSVTNSRPRVSSPSVGRPSPYGYLLTRFAEYATSAAVATPPAPAKDSVSCGGGKIVDEFTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVMDHSIRLVLEVAQHLGENMVRTIAMDGTEGVVRGQRVLNTGSPITVPVGRATLGRIINVIGEAIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLVLGEDHYNTARGVQEVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESITSFQGVLDGKYDDLPEQSFYMVGGIDEVIAKADKIAKESTS 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0869 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 451 IPR027417 -
Alju12g0869 569 Gene3D ATP synthase, F1 beta subunit 13 64 IPR042079 -
Alju12g0869 569 CDD F1-ATPase_beta_CD 171 450 - -
Alju12g0869 569 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 224 445 IPR000194 GO:0005524
Alju12g0869 569 Pfam ATP synthase alpha/beta family, beta-barrel domain 101 167 IPR004100 GO:0046034|GO:1902600
Alju12g0869 569 FunFam ATP synthase subunit beta 87 169 - -
Alju12g0869 569 SMART AAA_5 236 508 IPR003593 GO:0016887
Alju12g0869 569 NCBIfam F0F1 ATP synthase subunit beta 98 562 IPR005722 GO:0015986|GO:0045261|GO:0046933
Alju12g0869 569 CDD ATP-synt_F1_beta_C 452 559 - -
Alju12g0869 569 Hamap ATP synthase subunit beta [atpB]. 96 563 IPR005722 GO:0015986|GO:0045261|GO:0046933
Alju12g0869 569 Pfam ATP synthase F1 beta subunit 13 60 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Alju12g0869 569 Gene3D - 448 569 IPR024034 -
Alju12g0869 569 PANTHER ATP SYNTHASE 87 566 - -
Alju12g0869 569 ProSitePatterns ATP synthase alpha and beta subunits signature. 436 445 IPR020003 GO:0005524
Alju12g0869 569 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 448 564 - -
Alju12g0869 569 PIRSF ATPase_subunit_beta 19 569 - -
Alju12g0869 569 Gene3D - 88 169 - -
Alju12g0869 569 FunFam ATP synthase subunit beta 448 567 - -
Alju12g0869 569 Gene3D - 170 447 IPR027417 -
Alju12g0869 569 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 95 169 IPR036121 GO:0046034|GO:1902600
Alju12g0869 569 CDD ATP-synt_F1_beta_N 97 170 - -
Alju12g0869 569 FunFam ATP synthase subunit beta 170 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0869 Alju-ChrAlju12 26736373 26742222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0869 134 506 Primary Pumps ATPases(2) AT1G20260 28.678 1.35e-28 117