Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0852 ATGGGGGATCACTTTGTACTGCTGGTTGATCGTTTGATCACTGAATCTACATTAGAAGCTGCACTTGAAAGCAGAAATCGTGCAATGCAGGAGGCTGCAGCCTCAGCTGTGAATGAAGCAGAAGAAGTTATAAAGATGGGCATGGAAGATGTGAAATCTCCGAGGAAAACTGTTGAATGTCGGATATGTCATGATGAAGATGAAAATTCCAATATGGAGACACCCTGCTCCTGTTGTGGTAGCTTGAAGTATGCACACCGCAGATGTATACAAAGGTGGTGTAATGAGAAGGGTGACACTATCTGTGAGATATGCCACCAGCAATATAAACCTGGTTATACCGCTCCAACTTCATTATTTCGATTTGGACGAATTCCAATGACTTTCAGGGGAAATTGGGAGATTTCTAGAAGAGATTTGCACAATCATGGTCGCTTGGTACGCATGGTTTCCACGGACGACCAGTATTCAGATTCTAGTGCCGGAAATTTACAGTGCTTTCGTTTGAATTTGATTGCCCTCATGTTCATGATTTTATTTATTTTCAGACATACTCTTCCTCTCATAATCAGTGGAGACATGGACGATTCCATTTCTCTGTTTTTGGTGTTACTATTTCTAGCTGTGGTAATTTTTCCTCCTATATATTTAATTGTGAAAGCAGCAGTGACATCTATACATCGCCATCGGCGGCGACAACAACAACAGGAGCCTCCTAATGCCTCAGTCAACCTGTCGGATGATGAAAGTGATGAGCAAGTAGCTTTGCCGTCTCAGCTTCACGTTATTCGTGTTCAGTGA 801 0.4245 MGDHFVLLVDRLITESTLEAALESRNRAMQEAAASAVNEAEEVIKMGMEDVKSPRKTVECRICHDEDENSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTICEICHQQYKPGYTAPTSLFRFGRIPMTFRGNWEISRRDLHNHGRLVRMVSTDDQYSDSSAGNLQCFRLNLIALMFMILFIFRHTLPLIISGDMDDSISLFLVLLFLAVVIFPPIYLIVKAAVTSIHRHRRRQQQQEPPNASVNLSDDESDEQVALPSQLHVIRVQ 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0852 266 ProSiteProfiles Zinc finger RING-CH-type profile. 52 112 IPR011016 GO:0008270
Alju12g0852 266 SUPERFAMILY RING/U-box 56 110 - -
Alju12g0852 266 CDD RING_CH-C4HC3_MARCH 60 106 - -
Alju12g0852 266 MobiDBLite consensus disorder prediction 230 254 - -
Alju12g0852 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 116 IPR013083 -
Alju12g0852 266 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 235 IPR033275 -
Alju12g0852 266 SMART ringv_2 59 106 IPR011016 GO:0008270
Alju12g0852 266 FunFam Zinc finger family protein 48 115 - -
Alju12g0852 266 MobiDBLite consensus disorder prediction 236 253 - -
Alju12g0852 266 Pfam RING-variant domain 60 105 IPR011016 GO:0008270
Alju12g0852 266 Pfam Protein of unknown function (DUF3675) 111 221 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0852 Alju-ChrAlju12 26384672 26387113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0852 49 106 C3H Transcription Factor Family AT2G37950 42.623 1.96e-07 48.5