Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0851 ATGAGGAATGGGAAGTGGAAAATGCGCATTGCAATAAATGAGATTGTATGGAAGAGGGCAGAGTCTAAGCTTCGGGCATTGCCTCCTCTCAGCGGACACGCCGCGGAGACAATCCGAATCCCTCGTCATCGACTCATCGCCGTACTCACTCCCTCTACCTCACCCGCCGTCGAAGTCGAAGCAGAACCACAGACTTGCGTCGCCGTTCTTACTCCCTCAGCCCCACCTACCATCGGCCTCCTCACTCCTGAGTTCTCACTTAGTCTCTCCAGGCATCAACCATTCGTCCACCATAGCAAAAACGATACCCCTTACTCTATCCCTCAAATGGAGGATGCTGAAGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACTGCTCCCGCCAACCCAGCGGCGCCTTCTGGACCTCTGGCCTTATCTGATTCTCCCGCCGTTTCTACCGCAGCAGCTAATGGTGTTGCACCTGGCACGGCCGACCCTGCTGCGATCCACATTCCTGGCCGCCGGAGCTTCCGGCAGACGGTGTGCCGTCACTGGCTTCGTGGACTCTGCATGAAGGGCGATGCCTGCGGCTTCTTACACCAATATGACAAAGCGCGGATGCCCGTATGCCGGTTTTTTAGATTATTCGGGGAGTGTCGGGAGCAGGACTGCGTGTATAAGCACACAAACGAAGATATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCGAATGGTCCTGATTGCCGGTATAGGCATGCAAAATTGCCTGGACCTCCCCCTCCTGTTGAAGAAGTGCTTCAAAAGATTCAGCATTTATATTCTTACAACTATGCCAACTCTAACAAATTTTTCCAACAAAGAGGTTCTGGCTATTCTCAGCAAGCTGAGAAATCTCAGTTTCCACAAGGTCCTAATTCTGTAAGCCAAGCTGTGCCTGGGAAGCCATTAGCAGCAGAATCGGGCAATGTCCAGCAGCAGCAGCAACAGGCTCAGCAGCAGGGTAGCAATAGTCAAATACAAAATACTACTAATGGCCAACCCAATCAGACGAACAGAACAGCAACACCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGCTATCTGTTCAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAAGCTAAACTTAATGAAGCCTTTGACTCAGTGGAAAATGTGATATTGATTTTCTCAGTCAACAGAACTCGACATTTTCAGGGTTGTGCAAAGATGATATCCAGAATTGGGGGCTCTGCTACTGGGGGAAACTGGAAATATGCACATGGAACTGCACATTATGGACGTAACTTCTCTGTTAAATGGTTAAAGTTATGTGAATTGTCATTTCACAAGACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTAAAGATAAGTAGAGATTGTCAAGAACTGGAGCCTTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAACTTATGGCTGTCTCACTTGCAGCAGAGTCTAAGAGAGAGGAAGAGAAAGCAAAGGGAGTGAATCCAGACAATGGAGGAGAAAATCCAGATATTGTTCCATTTGAGGACAATGAAGAAGAGGAGGAGGAGGAGAGTGATGAAGAGGAGGAGAGCTTTGGCCCAAGTGTTGGGCCAGCTGCTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCTCCTCACATGCCTATGGGACGCGGAGCCCGGCCTATTCCAGGAATGCAGGGTTTTCCCCCAGTAATGATGGGAGATGGATTATCCTATGGACCAGTTACGCCTGATGGATTTGGTATGCCAGATCTATTTGGTATGGGCCCTCGTGGTTTTGGTCCCTATGGTCCTAGGTTCTCTAATGATTTTGCAGGGCCCCCAGCGGCGATGATGTTTCGTGGGCGACCCTCTCAACCTGGGATGTTTCCAGGTGGTGGGTTTGGGATGATGATGAATCCCGCACGTGCTCCCTTTATGGGTGGAATGGGGGCTCCAGGTGGGAATCCACCACGGGGCAGTAGACCAGGCGGTATGCCTCCAATGTTCATGCCACCACCGCAACATCAGAACGCTAACCGTGTTGCCAGGAGAGATCAAAGAGCTAATGATCGGAATGATAGGTATGGTCCAGGGCTAGAGTCGGGCAAGGGTCCAGACGCAGTGGGTCAATCCGGTGGACTTGATGATGACATGCAATACACAGGCCAGGCGGATCAGTATGCTGTTGGAAACAACCTCAGAAATGAAGAGAGTGAAAGTGAGGATGAGGCACCTCGAAGATCTAGACATGGTGAGGGGAAAAAAAGAAAAGGTGAAGTCTAG 2358 0.4958 MRNGKWKMRIAINEIVWKRAESKLRALPPLSGHAAETIRIPRHRLIAVLTPSTSPAVEVEAEPQTCVAVLTPSAPPTIGLLTPEFSLSLSRHQPFVHHSKNDTPYSIPQMEDAEGVLSFDFEGGLDTAPANPAAPSGPLALSDSPAVSTAAANGVAPGTADPAAIHIPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLYSYNYANSNKFFQQRGSGYSQQAEKSQFPQGPNSVSQAVPGKPLAAESGNVQQQQQQAQQQGSNSQIQNTTNGQPNQTNRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMISRIGGSATGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSLAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGPSVGPAAQGRGRGRGMMWPPHMPMGRGARPIPGMQGFPPVMMGDGLSYGPVTPDGFGMPDLFGMGPRGFGPYGPRFSNDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARAPFMGGMGAPGGNPPRGSRPGGMPPMFMPPPQHQNANRVARRDQRANDRNDRYGPGLESGKGPDAVGQSGGLDDDMQYTGQADQYAVGNNLRNEESESEDEAPRRSRHGEGKKRKGEV 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0851 785 MobiDBLite consensus disorder prediction 286 307 - -
Alju12g0851 785 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 168 228 - -
Alju12g0851 785 MobiDBLite consensus disorder prediction 760 785 - -
Alju12g0851 785 MobiDBLite consensus disorder prediction 286 355 - -
Alju12g0851 785 ProSiteProfiles YTH domain profile. 360 495 IPR007275 GO:0003723
Alju12g0851 785 MobiDBLite consensus disorder prediction 672 785 - -
Alju12g0851 785 MobiDBLite consensus disorder prediction 534 553 - -
Alju12g0851 785 CDD YTH 361 495 IPR007275 GO:0003723
Alju12g0851 785 MobiDBLite consensus disorder prediction 509 574 - -
Alju12g0851 785 ProSiteProfiles Zinc finger C3H1-type profile. 226 253 IPR000571 GO:0046872
Alju12g0851 785 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 144 777 IPR045168 -
Alju12g0851 785 SMART c3hfinal6 200 226 IPR000571 GO:0046872
Alju12g0851 785 SMART c3hfinal6 228 252 IPR000571 GO:0046872
Alju12g0851 785 SMART c3hfinal6 172 198 IPR000571 GO:0046872
Alju12g0851 785 ProSiteProfiles Zinc finger C3H1-type profile. 172 199 IPR000571 GO:0046872
Alju12g0851 785 MobiDBLite consensus disorder prediction 509 523 - -
Alju12g0851 785 MobiDBLite consensus disorder prediction 684 698 - -
Alju12g0851 785 MobiDBLite consensus disorder prediction 317 355 - -
Alju12g0851 785 Gene3D - 168 230 - -
Alju12g0851 785 MobiDBLite consensus disorder prediction 705 722 - -
Alju12g0851 785 SUPERFAMILY CCCH zinc finger 174 197 IPR036855 GO:0046872
Alju12g0851 785 Gene3D ph1033 like domains 337 498 - -
Alju12g0851 785 Pfam YT521-B-like domain 360 494 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0851 Alju-ChrAlju12 26354895 26370564 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju12g0851 YTH 2.8e-45 CL0178