Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0826 ATGAGGAAACCTTTTAATGATAAAAAGGTGGTATTGAGGAGAGGAGGTTGGTCCAAACAAGAAGATCAGAAACTCATCGCTTGCATCAACAAACACGGCGAGGGTTGCTGGCGTACCCTCCCTCCCGCTGCTGGCTTACTTCGCTGCGGCAAACGTTGTAGCCTGAGATGGATAAACTATCTAAGGCCTGACCTTAAAAGAGGAAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCCCTTCTCGGCAACCGGTGGTCACTGATAGCCGGAAGATTACCGGGGAGGACAGATAATGAGGTGAAGAACTATTGGAACTCTCACCTGAGAAAAAAGCTCATAAACAAGGGAATTGACCCCAACAATCATCGGTTAACTCGAAATCCGCTATTTATGTCCGGAAGCTCTGCATCTTCATCATATAACAGCCTGAAAGACAACAGTGCCAAGAATGATGATGATGATGAGCCAATTACAAAACCTTATGCTGATAAAAAAAAGTCTAATAATAATTGTGATCAGGTCTCAGATGCAGTAAGTGGTCTAGAGGAAGAAGAAGAATCATTTTGCATACCAGATTTGAACATCGACCTCACTATGAGCACTGAAATTATTTCTTGTTCTTCTTCTTCACCTCCTGATCCAAATCCAAAGACAATTCATGAATATTCTAGAACATCAACTGAACTTCTTCTGTTTAGGTGA 714 0.4202 MRKPFNDKKVVLRRGGWSKQEDQKLIACINKHGEGCWRTLPPAAGLLRCGKRCSLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRKKLINKGIDPNNHRLTRNPLFMSGSSASSSYNSLKDNSAKNDDDDEPITKPYADKKKSNNNCDQVSDAVSGLEEEEESFCIPDLNIDLTMSTEIISCSSSSPPDPNPKTIHEYSRTSTELLLFR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0826 237 CDD SANT 69 112 IPR001005 -
Alju12g0826 237 FunFam MYB transcription factor 68 129 - -
Alju12g0826 237 Gene3D - 11 67 - -
Alju12g0826 237 CDD SANT 17 61 IPR001005 -
Alju12g0826 237 MobiDBLite consensus disorder prediction 150 174 - -
Alju12g0826 237 SMART sant 66 114 IPR001005 -
Alju12g0826 237 SMART sant 13 63 IPR001005 -
Alju12g0826 237 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju12g0826 237 Gene3D - 69 132 - -
Alju12g0826 237 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 186 - -
Alju12g0826 237 Coils Coil 168 188 - -
Alju12g0826 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Alju12g0826 237 MobiDBLite consensus disorder prediction 121 182 - -
Alju12g0826 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Alju12g0826 237 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Alju12g0826 237 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju12g0826 237 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Alju12g0826 237 MobiDBLite consensus disorder prediction 129 149 - -
Alju12g0826 237 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju12g0826 237 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0826 Alju-ChrAlju12 25463170 25464155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0826 14 204 MYB Transcription Factor Family AT4G38620 53.807 8.98e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju12g0826 Myb_DNA-binding 5.5e-10 CL0123