Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0815 ATGAGCTCCGAGAGAGAGAAGAGAGGAATCACTACAGGACAAGCAACAGATTATGTTTTGGAATTAGGTGGGAATGCTGCCAGGGATGACAAGAAGACCAGGATCATACCTAGACACATTCAACTTGTCGTGAGGAACGATAAAGAACTAAGCAAACTGTTGGGATCTTTGACCATTGTGAGTGCAGGTGCTAAATATATGAATTCACTGCATGCTTGTGGTACGGACATCTTCATTGCCTACATTGGTTTCTTTTTTGGCCCTTGCAGAAAAGGCATATGTGGTTCCACAATGGGTAGGACAATTCAAGCAAGTGTGCTAAACAAGAACCTCCATGATAAATTTCGCCTCTCAATCATTGAAGGCCAAATTTACAAGTTTGCTAACTTTGAGGTCATTTCAAATGTTAATCAGTACAGAGCAACTACCCACCCATTTAAGATAACATTCACTCCTCGGACGTACTCTGTAGAAGATATTGCTACAATTCTAAGTTATGCCTACTCATTTTTCCCTATCCCAGAAATCATGAAAATTGATTTTCGTCATCCTGTGGATTATCTTATTGATGTACTGGCGTTTGTGAAATCAGTAGGCACATTGGAGGAGTTCCGCCGAGACAACGAGACGAAGAATAGGCTACGTCTATTATTGGCAGATGCCGAGAACAATGAAGTCGAGTGCACTTTGTTTGATAACTGTGCTTCAGATGCCTATATGGCTTACTTGCAGAATACTGAAAATCCTGTTGTGGTTTTATTAAACTTAGCAAGAGTTGGCTTTTTTGAGGATGGTACACCACAAGTGTGTTGCTCCTTTAATGCTACAAGGGCATTATTTAACCCTCCTATCACAGAGGTTAAGAATTTCACAGAAAGTGTAAAGGATGAAAATTCCCCTGTTATGGTTGCACTCTCTCAACCTATTACTTCACAGCTAAGTCAGCATTCAAACGGGGCTTCTTTACACAATCAGACCAAAGTCACTATCTCTCAAATACCTTCTCAAGCAATTGGAGATTCGATTAAGATTCATTATCTTGTCAAGGACAAAACTGGTTCAGCTTCTGTCATTTTCTGGGATAAACTTGCTATTCAGTTGGTTAAGAAGACAGCAACTGAACTGAAGCATTTACTAAAGAAGGATGATCATGAGTTTGACTTTCCTGATGAGTTAGACCTTCCGGTTGGAAAGAATGTTATGCTAAAACTGAAGATGAATGACTACAACAAGAAACATCCCACTTCTAGCATCAACGTTAGCCAATACACCATATGCGAAGATCTTTTGAACCAGTTCAATGAAGCAAATACGAAGAGTCATTCAGAAGGGAGTTCTGAAGTTCAGGCAACTATGGAGAGTGTTGAAGCTCAAAACGGTGCTCACAACATTATTGTGAAACCTGTGGCTAAAGGTGTTACTCCACTTATAACACCTCTTGAAGATAGCACCATATCTGACCCTTCTCAACATGTCGCTCTTGTTCCTGTTAAGGGAAAAAGAAGGATAACCAACAAGAGGAATGTTGTTAAGGATGACTCTGCAACTACTTCTCATAGGCCTTCTGCTGGTCCTGCTGAGGAAAGAGTTTCGAAAGTGATAAAGCAAGAGAAGTAG 1617 0.4038 MSSEREKRGITTGQATDYVLELGGNAARDDKKTRIIPRHIQLVVRNDKELSKLLGSLTIVSAGAKYMNSLHACGTDIFIAYIGFFFGPCRKGICGSTMGRTIQASVLNKNLHDKFRLSIIEGQIYKFANFEVISNVNQYRATTHPFKITFTPRTYSVEDIATILSYAYSFFPIPEIMKIDFRHPVDYLIDVLAFVKSVGTLEEFRRDNETKNRLRLLLADAENNEVECTLFDNCASDAYMAYLQNTENPVVVLLNLARVGFFEDGTPQVCCSFNATRALFNPPITEVKNFTESVKDENSPVMVALSQPITSQLSQHSNGASLHNQTKVTISQIPSQAIGDSIKIHYLVKDKTGSASVIFWDKLAIQLVKKTATELKHLLKKDDHEFDFPDELDLPVGKNVMLKLKMNDYNKKHPTSSINVSQYTICEDLLNQFNEANTKSHSEGSSEVQATMESVEAQNGAHNIIVKPVAKGVTPLITPLEDSTISDPSQHVALVPVKGKRRITNKRNVVKDDSATTSHRPSAGPAEERVSKVIKQEK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0815 538 Pfam Domain of unknown function DUF223 98 154 IPR003871 -
Alju12g0815 538 CDD RPA1_DBD_B_like 190 295 - -
Alju12g0815 538 Gene3D Histone, subunit A 14 73 IPR009072 GO:0046982
Alju12g0815 538 SMART h2a4 1 77 IPR002119 GO:0000786|GO:0003677|GO:0030527
Alju12g0815 538 Gene3D - 93 160 IPR012340 -
Alju12g0815 538 Gene3D - 163 303 IPR012340 -
Alju12g0815 538 PRINTS Histone H2A signature 14 27 IPR002119 GO:0000786|GO:0003677|GO:0030527
Alju12g0815 538 PRINTS Histone H2A signature 28 42 IPR002119 GO:0000786|GO:0003677|GO:0030527
Alju12g0815 538 SUPERFAMILY Nucleic acid-binding proteins 168 295 IPR012340 -
Alju12g0815 538 SUPERFAMILY Histone-fold 16 55 IPR009072 GO:0046982
Alju12g0815 538 CDD RPA1_DBD_A_like 102 154 - -
Alju12g0815 538 MobiDBLite consensus disorder prediction 503 538 - -
Alju12g0815 538 PANTHER HISTONE H2A 16 64 IPR002119 GO:0000786|GO:0003677|GO:0030527
Alju12g0815 538 Gene3D - 312 435 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0815 Alju-ChrAlju12 24899558 24905493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0815 99 335 Core DNA Replication Machinery Family AT5G08020 23.171 3.60e-06 47.8